Aliases for MRPS18BP1 Gene

Aliases for MRPS18BP1 Gene

  • Mitochondrial Ribosomal Protein S18B Pseudogene 1 2 3 5
  • MRPS18BP1 5

External Ids for MRPS18BP1 Gene

Previous GeneCards Identifiers for MRPS18BP1 Gene

  • GC01U900142
  • GC01M213431
  • GC01M212763
  • GC01M214441
  • GC01M216375

Summaries for MRPS18BP1 Gene

GeneCards Summary for MRPS18BP1 Gene

MRPS18BP1 (Mitochondrial Ribosomal Protein S18B Pseudogene 1) is a Pseudogene.

Additional gene information for MRPS18BP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MRPS18BP1 Gene

Genomics for MRPS18BP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MRPS18BP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J216224 Enhancer 0.6 Ensembl 11.4 -22.5 -22475 0.6 FOXA1 SOX13 FOXA2 JUND CUX1 GATA3 EGR1 FOS SOX5 ARID3A MRPS18BP1 ENSG00000236292 USH2A-AS1 piR-49713-003 USH2A KCTD3
GH01J216140 Enhancer 0.4 Ensembl 11.1 +60.7 60725 1 ZFX SMARCA4 EZH2 ENSG00000236292 MRPS18BP1 piR-41245-026 lnc-KCTD3-9 USH2A KCTD3
GH01J216172 Enhancer 0.3 Ensembl ENCODE 11.9 +28.2 28194 1.3 ENSG00000236292 MRPS18BP1 piR-55705-004 piR-38778 USH2A KCTD3
GH01J216121 Enhancer 0.3 UCNEbase 11.8 +80.2 80220 0.3 ENSG00000236292 MRPS18BP1 lnc-KCTD3-9 piR-41245-026 USH2A KCTD3
GH01J216223 Enhancer 0.3 Ensembl 11.4 -21.7 -21675 0.2 POLR2A MRPS18BP1 ENSG00000236292 USH2A-AS1 piR-49713-003 USH2A KCTD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MRPS18BP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MRPS18BP1 Gene

Genomic Locations for MRPS18BP1 Gene
chr1:216,201,058-216,201,826
(GRCh38/hg38)
Size:
769 bases
Orientation:
Minus strand
chr1:216,374,400-216,375,168
(GRCh37/hg19)
Size:
769 bases
Orientation:
Minus strand

Genomic View for MRPS18BP1 Gene

Genes around MRPS18BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPS18BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS18BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS18BP1 Gene

Proteins for MRPS18BP1 Gene

Post-translational modifications for MRPS18BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRPS18BP1 Gene

Domains & Families for MRPS18BP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MRPS18BP1 Gene

Function for MRPS18BP1 Gene

Phenotypes From GWAS Catalog for MRPS18BP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRPS18BP1 Gene

Localization for MRPS18BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MRPS18BP1 Gene

Pathways & Interactions for MRPS18BP1 Gene

PathCards logo

SuperPathways for MRPS18BP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MRPS18BP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MRPS18BP1 Gene

Drugs & Compounds for MRPS18BP1 Gene

No Compound Related Data Available

Transcripts for MRPS18BP1 Gene

mRNA/cDNA for MRPS18BP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS18BP1 Gene

No ASD Table

Relevant External Links for MRPS18BP1 Gene

GeneLoc Exon Structure for
MRPS18BP1

Expression for MRPS18BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MRPS18BP1 Gene

genes like me logo Genes that share expression patterns with MRPS18BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPS18BP1 Gene

Orthologs for MRPS18BP1 Gene

Evolution for MRPS18BP1 Gene

ENSEMBL:
Gene Tree for MRPS18BP1 (if available)
TreeFam:
Gene Tree for MRPS18BP1 (if available)

No data available for Orthologs for MRPS18BP1 Gene

Paralogs for MRPS18BP1 Gene

No data available for Paralogs for MRPS18BP1 Gene

Variants for MRPS18BP1 Gene

Additional Variant Information for MRPS18BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPS18BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MRPS18BP1 Gene

Disorders for MRPS18BP1 Gene

Additional Disease Information for MRPS18BP1

Genetic Association Database
(GAD)

No disorders were found for MRPS18BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPS18BP1 Gene

Publications for MRPS18BP1 Gene

  1. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. (PMID: 12706105) Zhang Z … Gerstein M (Genomics 2003) 2 3
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41

Products for MRPS18BP1 Gene

Sources for MRPS18BP1 Gene