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Aliases for MRPL4 Gene

Aliases for MRPL4 Gene

  • Mitochondrial Ribosomal Protein L4 2 3 5
  • Mitochondrial Large Ribosomal Subunit Protein UL4m 3 4
  • MRP-L4 3 4
  • L4mt 3 4
  • 39S Ribosomal Protein L4, Mitochondrial 3
  • CGI-28 3

External Ids for MRPL4 Gene

Previous GeneCards Identifiers for MRPL4 Gene

  • GC19P010484
  • GC19P010585
  • GC19P010207
  • GC19P010223
  • GC19P010362
  • GC19P009942

Summaries for MRPL4 Gene

Entrez Gene Summary for MRPL4 Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Sequence analysis identified alternatively spliced variants that encode different protein isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRPL4 Gene

MRPL4 (Mitochondrial Ribosomal Protein L4) is a Protein Coding gene. Among its related pathways are Organelle biogenesis and maintenance and Mitochondrial translation. Gene Ontology (GO) annotations related to this gene include structural constituent of ribosome.

Gene Wiki entry for MRPL4 Gene

Additional gene information for MRPL4 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPL4 Gene

Genomics for MRPL4 Gene

GeneHancer (GH) Regulatory Elements for MRPL4 Gene

Promoters and enhancers for MRPL4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I010251 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 557.5 +0.2 227 2.1 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 ZNF213 MRPL4 DNMT1 ILF3 LOC100128428 LOC100419831 QTRT1 KRI1 ZNF177 ENSG00000267510 ZNF562
GH19I010250 Enhancer 1.1 Ensembl ENCODE 557.5 -1.7 -1700 0.4 HDAC1 RB1 ARNT ARID4B KLF17 SIN3A ZNF2 RAD21 ZNF335 ZNF121 MRPL4 ICAM4 ICAM5 EIF3G TYK2 C19orf66 S1PR2
GH19I010400 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 12.5 +152.3 152316 6.5 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 ZNF207 MIR1181 CDC37 ICAM1 MRPL4 ICAM5 ICAM4 RAVER1 PDE4A TYK2 C19orf38
GH19I010224 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 8.3 -23.5 -23501 7.9 PKNOX1 ATF1 ARID4B SIN3A ZNF2 IRF4 BRCA1 ZNF121 GLIS2 ZNF143 S1PR2 ILF3 TIMM29 PPAN KRI1 ZNF561 ZNF426 ZNF699 FBXL12 LOC100419831
GH19I010338 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 12.1 +87.4 87443 2.3 HDGF BCOR BACH1 ZNF384 EBF1 ZNF48 YY1 RELA ZNF121 POLR2A ICAM3 ENSG00000167807 ZGLP1 TYK2 ICAM5 ICAM4 ICAM1 MRPL4 PIR48013
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MRPL4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MRPL4 gene promoter:

Genomic Locations for MRPL4 Gene

Genomic Locations for MRPL4 Gene
chr19:10,251,901-10,260,060
(GRCh38/hg38)
Size:
8,160 bases
Orientation:
Plus strand
chr19:10,362,577-10,370,736
(GRCh37/hg19)

Genomic View for MRPL4 Gene

Genes around MRPL4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPL4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPL4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPL4 Gene

Proteins for MRPL4 Gene

  • Protein details for MRPL4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYD3-RM04_HUMAN
    Recommended name:
    39S ribosomal protein L4, mitochondrial
    Protein Accession:
    Q9BYD3
    Secondary Accessions:
    • A6NNV7
    • Q9BW07
    • Q9H4N2
    • Q9Y317

    Protein attributes for MRPL4 Gene

    Size:
    311 amino acids
    Molecular mass:
    34919 Da
    Quaternary structure:
    • Component of the mitochondrial large ribosomal subunit (mt-LSU). Mature mammalian 55S mitochondrial ribosomes consist of a small (28S) and a large (39S) subunit. The 28S small subunit contains a 12S ribosomal RNA (12S mt-rRNA) and 30 different proteins. The 39S large subunit contains a 16S rRNA (16S mt-rRNA), a copy of mitochondrial valine transfer RNA (mt-tRNA(Val)), which plays an integral structural role, and 52 different proteins.
    SequenceCaution:
    • Sequence=AAD27737.1; Type=Frameshift; Positions=128; Evidence={ECO:0000305}; Sequence=AAG02005.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for MRPL4 Gene

    Alternative splice isoforms for MRPL4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MRPL4 Gene

Post-translational modifications for MRPL4 Gene

  • Ubiquitination at isoforms=2131
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for MRPL4 Gene

Domains & Families for MRPL4 Gene

Gene Families for MRPL4 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Ribosomal proteins

Protein Domains for MRPL4 Gene

Suggested Antigen Peptide Sequences for MRPL4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BYD3

UniProtKB/Swiss-Prot:

RM04_HUMAN :
  • Belongs to the universal ribosomal protein uL4 family.
Family:
  • Belongs to the universal ribosomal protein uL4 family.
genes like me logo Genes that share domains with MRPL4: view

Function for MRPL4 Gene

Phenotypes From GWAS Catalog for MRPL4 Gene

Gene Ontology (GO) - Molecular Function for MRPL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IBA --
GO:0003735 structural constituent of ribosome IBA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with MRPL4: view
genes like me logo Genes that share phenotypes with MRPL4: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MRPL4 Gene

Localization for MRPL4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPL4 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MRPL4 gene
Compartment Confidence
mitochondrion 5
cytosol 4
nucleus 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Endoplasmic reticulum (3)
  • Nucleoli (3)
  • Nucleoli fibrillar center (3)
  • Nucleus (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for MRPL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005762 mitochondrial large ribosomal subunit IDA 25278503
GO:0005840 ribosome IEA --
GO:0022626 cytosolic ribosome IBA --
genes like me logo Genes that share ontologies with MRPL4: view

Pathways & Interactions for MRPL4 Gene

genes like me logo Genes that share pathways with MRPL4: view

Gene Ontology (GO) - Biological Process for MRPL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IBA --
GO:0070125 mitochondrial translational elongation TAS --
GO:0070126 mitochondrial translational termination TAS --
genes like me logo Genes that share ontologies with MRPL4: view

No data available for SIGNOR curated interactions for MRPL4 Gene

Drugs & Compounds for MRPL4 Gene

No Compound Related Data Available

Transcripts for MRPL4 Gene

Unigene Clusters for MRPL4 Gene

Mitochondrial ribosomal protein L4:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPL4 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9
SP1: - - - -
SP2: - - -
SP3: - -
SP4: - -
SP5: - -
SP6:

Relevant External Links for MRPL4 Gene

GeneLoc Exon Structure for
MRPL4
ECgene alternative splicing isoforms for
MRPL4

Expression for MRPL4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MRPL4 Gene

Protein differential expression in normal tissues from HIPED for MRPL4 Gene

This gene is overexpressed in Breast (27.0) and Lung (14.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MRPL4 Gene



Protein tissue co-expression partners for MRPL4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MRPL4 Gene:

MRPL4

SOURCE GeneReport for Unigene cluster for MRPL4 Gene:

Hs.279652

Evidence on tissue expression from TISSUES for MRPL4 Gene

  • Lung(4.4)
  • Nervous system(2.5)
  • Skin(2.2)
  • Muscle(2)
genes like me logo Genes that share expression patterns with MRPL4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPL4 Gene

Orthologs for MRPL4 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MRPL4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MRPL4 34 33
  • 99.57 (n)
OneToOne
cow
(Bos Taurus)
Mammalia MRPL4 33 34
  • 84.58 (n)
dog
(Canis familiaris)
Mammalia MRPL4 33 34
  • 83.22 (n)
rat
(Rattus norvegicus)
Mammalia Mrpl4 33
  • 80.61 (n)
mouse
(Mus musculus)
Mammalia Mrpl4 33 16 34
  • 79.37 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MRPL4 34
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MRPL4 34
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MRPL4 34
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mrpl4 33
  • 63.38 (n)
zebrafish
(Danio rerio)
Actinopterygii zgmrpl4 33 34
  • 64.73 (n)
fruit fly
(Drosophila melanogaster)
Insecta mRpL4 33 34 35
  • 57.87 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007937 33
  • 56.29 (n)
worm
(Caenorhabditis elegans)
Secernentea mrpl-4 33 34
  • 49.39 (n)
T23B12.2 35
  • 40 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YML6 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G20060 33
  • 44.27 (n)
rice
(Oryza sativa)
Liliopsida Os11g0585700 33
  • 45.99 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2665 34
  • 34 (a)
OneToOne
Species where no ortholog for MRPL4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRPL4 Gene

ENSEMBL:
Gene Tree for MRPL4 (if available)
TreeFam:
Gene Tree for MRPL4 (if available)

Paralogs for MRPL4 Gene

No data available for Paralogs for MRPL4 Gene

Variants for MRPL4 Gene

Sequence variations from dbSNP and Humsavar for MRPL4 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs375741179 benign, not specified 10,259,609(+) G/A/C 3_prime_UTR_variant, downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs765019295 benign, not specified 10,259,604(+) A/C 3_prime_UTR_variant, downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000048519 -- 10,257,153(+) T/C intron_variant
rs1000172059 -- 10,253,590(+) A/C intron_variant
rs1000172980 -- 10,250,457(+) AAAAAAAAAA/AAAAAAAAAAA upstream_transcript_variant

Variation tolerance for MRPL4 Gene

Residual Variation Intolerance Score: 94% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.28; 81.30% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for MRPL4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPL4

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MRPL4 Gene

Disorders for MRPL4 Gene

Additional Disease Information for MRPL4

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MRPL4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPL4 Gene

Publications for MRPL4 Gene

  1. Structure of the large ribosomal subunit from human mitochondria. (PMID: 25278503) Brown A … Ramakrishnan V (Science (New York, N.Y.) 2014) 3 4 58
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson SL … O'Brien SJ (PloS one 2010) 3 44 58
  3. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood HD … Lan Q (Occupational and environmental medicine 2009) 3 44 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. (PMID: 11279069) Suzuki T … Watanabe K (The Journal of biological chemistry 2001) 3 4 58

Products for MRPL4 Gene

Sources for MRPL4 Gene

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