Aliases for MRGPRF-AS1 Gene

Data sources for MRGPRF-AS1 Gene:

RNA type for MRGPRF-AS1 Gene

lncRNA

Aliases for MRGPRF-AS1 Gene

External Ids for MRGPRF-AS1 Gene

Summaries for MRGPRF-AS1 Gene

GeneCards Summary for MRGPRF-AS1 Gene

MRGPRF-AS1 (MRGPRF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MRGPRF-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MRGPRF-AS1 Gene

Genomics for MRGPRF-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MRGPRF-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MRGPRF-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MRGPRF-AS1 Gene

Latest Assembly
chr11:69,012,282-69,018,867
(GRCh38/hg38)
Size:
6,586 bases
Orientation:
Plus strand

Previous Assembly
chr11:68,779,822-68,785,915
(GRCh37/hg19 by Entrez Gene)
Size:
6,094 bases
Orientation:
Plus strand

chr11:68,779,751-68,785,915
(GRCh37/hg19 by Ensembl)
Size:
6,165 bases
Orientation:
Plus strand

Genomic View for MRGPRF-AS1 Gene

Genes around MRGPRF-AS1 on UCSC Golden Path with GeneCards custom track
MRGPRF-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MRGPRF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRGPRF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRGPRF-AS1 Gene

Proteins for MRGPRF-AS1 Gene

Post-translational modifications for MRGPRF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRGPRF-AS1 Gene

Domains & Families for MRGPRF-AS1 Gene

Gene Families for MRGPRF-AS1 Gene

genes like me logo Genes that share domains with MRGPRF-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MRGPRF-AS1 Gene

Function for MRGPRF-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRGPRF-AS1 Gene

Localization for MRGPRF-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MRGPRF-AS1 gene
Compartment Confidence
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MRGPRF-AS1 Gene

Pathways & Interactions for MRGPRF-AS1 Gene

PathCards logo

SuperPathways for MRGPRF-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MRGPRF-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MRGPRF-AS1 Gene

Drugs & Compounds for MRGPRF-AS1 Gene

No Compound Related Data Available

Transcripts for MRGPRF-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MRGPRF-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000CEBE2_9606 lncRNA 1496 4

Ensembl: ENST00000538407 (view in UCSC) ,

LncBook: HSALNT0177485,

LNCipedia: MRGPRF-AS1:5,

NONCODE: NONHSAT022562.2,

URS0000113874_9606 lncRNA 542 4

Ensembl: ENST00000569432 (view in UCSC) ,

LncBook: HSALNT0177477,

LNCipedia: MRGPRF-AS1:1,

NONCODE: NONHSAT022560.2,

URS0000574064_9606 lncRNA 532 4

Ensembl: ENST00000569428 (view in UCSC) ,

LncBook: HSALNT0177480,

LNCipedia: MRGPRF-AS1:2,

NONCODE: NONHSAT022561.2,

URS000075D8FB_9606 lncRNA 1567 1

RefSeq: NR_120541,

URS00008B38C4_9606 lncRNA 981 3

LncBook: HSALNT0177494,

LNCipedia: MRGPRF-AS1:6,

NONCODE: NONHSAT022563.2,

MRGPRF-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MRGPRF-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MRGPRF-AS1 Gene

No ASD Table

Relevant External Links for MRGPRF-AS1 Gene

GeneLoc Exon Structure for
MRGPRF-AS1

Expression for MRGPRF-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MRGPRF-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MRGPRF-AS1

genes like me logo Genes that share expression patterns with MRGPRF-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRGPRF-AS1 Gene

Orthologs for MRGPRF-AS1 Gene

Evolution for MRGPRF-AS1 Gene

ENSEMBL:
Gene Tree for MRGPRF-AS1 (if available)
TreeFam:
Gene Tree for MRGPRF-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for MRGPRF-AS1

No data available for Orthologs for MRGPRF-AS1 Gene

Paralogs for MRGPRF-AS1 Gene

No data available for Paralogs for MRGPRF-AS1 Gene

Variants for MRGPRF-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MRGPRF-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MRGPRF-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv468619 CNV loss 19166990
nsv527120 CNV loss 19592680
nsv555299 CNV loss 21841781
nsv825970 CNV gain 20364138
nsv832196 CNV loss 17160897

Additional Variant Information for MRGPRF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRGPRF-AS1
Leiden Open Variation Database (LOVD)
MRGPRF-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MRGPRF-AS1 Gene

Disorders for MRGPRF-AS1 Gene

Additional Disease Information for MRGPRF-AS1

No disorders were found for MRGPRF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRGPRF-AS1 Gene

Publications for MRGPRF-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for MRGPRF-AS1 Gene

Products for MRGPRF-AS1 Gene

Sources for MRGPRF-AS1 Gene