Aliases for MPTX1 Gene

Aliases for MPTX1 Gene

  • Mucosal Pentraxin 1 (Pseudogene) 2 3 5
  • MPTX 3 4
  • Amyloid P Component, Serum Pseudogene 3
  • Putative Mucosal Pentraxin Homolog 4

External Ids for MPTX1 Gene

Summaries for MPTX1 Gene

GeneCards Summary for MPTX1 Gene

MPTX1 (Mucosal Pentraxin 1 (Pseudogene)) is a Pseudogene.

Additional gene information for MPTX1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MPTX1 Gene

Genomics for MPTX1 Gene

GeneHancer (GH) Regulatory Elements for MPTX1 Gene

Promoters and enhancers for MPTX1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J159274 Enhancer 0.3 Ensembl 500.7 -1.5 -1502 1.2 ZNF146 MPTX1 OR10J3 ACKR1 CADM3 RF00994-060
GH01J159266 Enhancer 0.7 Ensembl 0.4 -9.8 -9802 0.6 RBM25 NCOR1 GABPA TRIM24 FOSL1 TAL1 NR2F1 STAT5A TCF12 GATA2 ACKR1 OR10J1 MPTX1 RF00994-060
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MPTX1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MPTX1 Gene

Genomic Locations for MPTX1 Gene
chr1:159,276,503-159,277,182
(GRCh38/hg38)
Size:
680 bases
Orientation:
Plus strand
chr1:159,246,293-159,247,282
(GRCh37/hg19)
Size:
990 bases
Orientation:
Plus strand

Genomic View for MPTX1 Gene

Genes around MPTX1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MPTX1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MPTX1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MPTX1 Gene

Proteins for MPTX1 Gene

  • Protein details for MPTX1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MV57-MPTX_HUMAN
    Recommended name:
    Putative mucosal pentraxin homolog
    Protein Accession:
    A8MV57

    Protein attributes for MPTX1 Gene

    Size:
    137 amino acids
    Molecular mass:
    15138 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MPTX1 Gene

Post-translational modifications for MPTX1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MPTX1 Gene

Domains & Families for MPTX1 Gene

Gene Families for MPTX1 Gene

Protein Domains for MPTX1 Gene

Suggested Antigen Peptide Sequences for MPTX1 Gene

GenScript: Design optimal peptide antigens:
  • Putative mucosal pentraxin homolog (MPTX_HUMAN)

Graphical View of Domain Structure for InterPro Entry

A8MV57

UniProtKB/Swiss-Prot:

MPTX_HUMAN :
  • Belongs to the pentraxin family.
Family:
  • Belongs to the pentraxin family.
genes like me logo Genes that share domains with MPTX1: view

Function for MPTX1 Gene

Phenotypes From GWAS Catalog for MPTX1 Gene

Gene Ontology (GO) - Molecular Function for MPTX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with MPTX1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MPTX1 Gene

Localization for MPTX1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MPTX1 Gene

Pathways & Interactions for MPTX1 Gene

PathCards logo

SuperPathways for MPTX1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MPTX1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MPTX1 Gene

Drugs & Compounds for MPTX1 Gene

No Compound Related Data Available

Transcripts for MPTX1 Gene

mRNA/cDNA for MPTX1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MPTX1 Gene

No ASD Table

Relevant External Links for MPTX1 Gene

GeneLoc Exon Structure for
MPTX1

Expression for MPTX1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MPTX1 Gene

mRNA Expression by UniProt/SwissProt for MPTX1 Gene:

A8MV57-MPTX_HUMAN
Tissue specificity: Not expressed in the intestinal tract including ascending colon, descending colon and rectum. Not expressed in the human colon cancer cell lines HT-29 and CaCo-2.
genes like me logo Genes that share expression patterns with MPTX1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MPTX1 Gene

Orthologs for MPTX1 Gene

Evolution for MPTX1 Gene

ENSEMBL:
Gene Tree for MPTX1 (if available)
TreeFam:
Gene Tree for MPTX1 (if available)

No data available for Orthologs for MPTX1 Gene

Paralogs for MPTX1 Gene

(2) SIMAP similar genes for MPTX1 Gene using alignment to 1 proteins:

  • MPTX_HUMAN
genes like me logo Genes that share paralogs with MPTX1: view

No data available for Paralogs for MPTX1 Gene

Variants for MPTX1 Gene

Additional Variant Information for MPTX1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MPTX1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MPTX1 Gene

Disorders for MPTX1 Gene

No disorders were found for MPTX1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MPTX1 Gene

Publications for MPTX1 Gene

  1. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 3 54
  2. Dietary modulation and structure prediction of rat mucosal pentraxin (Mptx) protein and loss of function in humans. (PMID: 18850182) van der Meer-van Kraaij C … Keijer J (Genes & nutrition 2007) 4 54
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 54

Products for MPTX1 Gene

Sources for MPTX1 Gene