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Aliases for MNX1-AS1 Gene

Subcategory (RNA class) for MNX1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MNX1-AS1 Gene

  • MNX1 Antisense RNA 1 (Head To Head) 2 3 5
  • CCAT5 3

External Ids for MNX1-AS1 Gene

Previous GeneCards Identifiers for MNX1-AS1 Gene

  • GC07P156814
  • GC07P156816

Summaries for MNX1-AS1 Gene

GeneCards Summary for MNX1-AS1 Gene

MNX1-AS1 (MNX1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MNX1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MNX1-AS1 Gene

Genomics for MNX1-AS1 Gene

GeneHancer (GH) Regulatory Elements for MNX1-AS1 Gene

Promoters and enhancers for MNX1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I157011 Enhancer 1 ENCODE dbSUPER 550.8 +1.1 1057 0.2 ELF3 FOXA2 ARID4B ZNF76 SIN3A FEZF1 RARA ZNF335 ZSCAN5C CREM MNX1 MNX1-AS1 ENSG00000236102
GH07I157005 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.9 -2.0 -2011 5.8 HDGF FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF766 ZNF213 ZNF207 MNX1 GC07M157007 NOM1 MNX1-AS1 MNX1-AS2
GH07I156998 Enhancer 1.3 Ensembl ENCODE dbSUPER 8.1 -10.7 -10708 2.3 HDGF PKNOX1 SMAD1 FOXA2 ARNT GLIS2 ATF7 SP5 ATF4 SMARCA4 NOM1 MNX1-AS1 MNX1-AS2 MNX1 PIR33298
GH07I157158 Enhancer 0.6 Ensembl ENCODE 11.1 +147.9 147921 1.4 ZNF316 SP7 MNX1 MNX1-AS1 MNX1-AS2 GC07M157142 UBE3C GC07P157194 GC07P157193
GH07I156931 Enhancer 0.6 ENCODE 10.7 -78.7 -78681 1.8 SOX13 PKNOX1 JUN FOXA1 MITF SP1 ZNF366 SCRT2 PRDM1 TRIM28 MNX1-AS2 MNX1 MNX1-AS1 NOM1 LMBR1 LOC105375604 LOC102723795
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MNX1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MNX1-AS1 Gene

Genomic Locations for MNX1-AS1 Gene
chr7:157,010,805-157,016,426
(GRCh38/hg38)
Size:
5,622 bases
Orientation:
Plus strand
chr7:156,803,499-156,809,120
(GRCh37/hg19)

Genomic View for MNX1-AS1 Gene

Genes around MNX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MNX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MNX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MNX1-AS1 Gene

Proteins for MNX1-AS1 Gene

Post-translational modifications for MNX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MNX1-AS1 Gene

Domains & Families for MNX1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MNX1-AS1 Gene

Function for MNX1-AS1 Gene

Phenotypes From GWAS Catalog for MNX1-AS1 Gene

Phenotypes for MNX1-AS1 Gene

GenomeRNAi human phenotypes for MNX1-AS1:
genes like me logo Genes that share phenotypes with MNX1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MNX1-AS1 Gene

Localization for MNX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MNX1-AS1 Gene

Pathways & Interactions for MNX1-AS1 Gene

SuperPathways for MNX1-AS1 Gene

No Data Available

Interacting Proteins for MNX1-AS1 Gene

Gene Ontology (GO) - Biological Process for MNX1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MNX1-AS1 Gene

Drugs & Compounds for MNX1-AS1 Gene

No Compound Related Data Available

Transcripts for MNX1-AS1 Gene

mRNA/cDNA for MNX1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MNX1-AS1 Gene

No ASD Table

Relevant External Links for MNX1-AS1 Gene

GeneLoc Exon Structure for
MNX1-AS1
ECgene alternative splicing isoforms for
MNX1-AS1

Expression for MNX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MNX1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MNX1-AS1 Gene

This gene is overexpressed in Pancreas (x19.2) and Testis (x7.8).
genes like me logo Genes that share expression patterns with MNX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MNX1-AS1 Gene

Orthologs for MNX1-AS1 Gene

Evolution for MNX1-AS1 Gene

ENSEMBL:
Gene Tree for MNX1-AS1 (if available)
TreeFam:
Gene Tree for MNX1-AS1 (if available)

No data available for Orthologs for MNX1-AS1 Gene

Paralogs for MNX1-AS1 Gene

No data available for Paralogs for MNX1-AS1 Gene

Variants for MNX1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MNX1-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs121912547 pathogenic, Currarino triad 157,009,859(+) G/A/T upstream_transcript_variant
rs548755417 likely-benign, not specified 157,009,950(+) GCGGCGGCGGCGGCGGCGGCGGCGGCGGC/GCGGCGGCGGCGGCGGC/GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC upstream_transcript_variant
rs1000243545 -- 157,016,580(+) G/T downstream_transcript_variant
rs1002302115 -- 157,011,599(+) C/T intron_variant
rs1002333153 -- 157,011,332(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MNX1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1150n67 CNV gain 20364138
nsv465249 CNV loss 19166990
nsv6022 CNV insertion 18451855
nsv609210 CNV loss 21841781
nsv951667 CNV deletion 24416366

Additional Variant Information for MNX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MNX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MNX1-AS1 Gene

Disorders for MNX1-AS1 Gene

Additional Disease Information for MNX1-AS1

No disorders were found for MNX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MNX1-AS1 Gene

Publications for MNX1-AS1 Gene

  1. The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration. (PMID: 27797375) Matsumura K … Akiyama T (Oncogene 2017) 2 3 58
  2. Long Noncoding RNA MNX1-AS1 Knockdown Inhibits Cell Proliferation and Migration in Ovarian Cancer. (PMID: 28414551) Lv Y … Zhao X (Cancer biotherapy & radiopharmaceuticals 2017) 2 3 58
  3. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T … Croce CM (Journal of the National Cancer Institute 2015) 2 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MNX1-AS1 Gene

Sources for MNX1-AS1 Gene

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