Aliases for MMP25-AS1 Gene

Subcategory (RNA class) for MMP25-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MMP25-AS1 Gene

  • MMP25 Antisense RNA 1 2 3 5
  • MMP25-AS1 2 5 165
  • NONHSAG018387.2 91
  • NONHSAG018386.2 91
  • HSALNG0109110 164
  • Lnc-BICDL2-3 165

External Ids for MMP25-AS1 Gene

Previous GeneCards Identifiers for MMP25-AS1 Gene

  • GC16M003051

Summaries for MMP25-AS1 Gene

GeneCards Summary for MMP25-AS1 Gene

MMP25-AS1 (MMP25 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MMP25-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MMP25-AS1 Gene

Genomics for MMP25-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MMP25-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MMP25-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MMP25-AS1 Gene

Genomic Locations for MMP25-AS1 Gene
chr16:3,037,251-3,075,614
(GRCh38/hg38)
Size:
38,364 bases
Orientation:
Minus strand
chr16:3,101,992-3,109,371
(GRCh37/hg19)
Size:
7,380 bases
Orientation:
Minus strand

Genomic View for MMP25-AS1 Gene

Genes around MMP25-AS1 on UCSC Golden Path with GeneCards custom track
MMP25-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MMP25-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MMP25-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MMP25-AS1 Gene

Proteins for MMP25-AS1 Gene

Post-translational modifications for MMP25-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MMP25-AS1 Gene

Domains & Families for MMP25-AS1 Gene

Gene Families for MMP25-AS1 Gene

genes like me logo Genes that share domains with MMP25-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MMP25-AS1 Gene

Function for MMP25-AS1 Gene

Phenotypes From GWAS Catalog for MMP25-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MMP25-AS1 Gene

Localization for MMP25-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MMP25-AS1 Gene

Pathways & Interactions for MMP25-AS1 Gene

PathCards logo

SuperPathways for MMP25-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MMP25-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MMP25-AS1 Gene

Drugs & Compounds for MMP25-AS1 Gene

No Compound Related Data Available

Transcripts for MMP25-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MMP25-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000581E55_9606 lncRNA 1001 4

Ensembl: ENST00000573953 (view in UCSC) ,

LncBook: HSALNT0226823,

LNCipedia: MMP25-AS1:17,

NONCODE: NONHSAT147943.2,

URS0000199A53_9606 lncRNA 483 4

Ensembl: ENST00000573878 (view in UCSC) ,

LncBook: HSALNT0226812,

LNCipedia: MMP25-AS1:21,

NONCODE: NONHSAT147936.2,

URS00001BE5A5_9606 lncRNA 420 4

Ensembl: ENST00000572930 (view in UCSC) ,

LncBook: HSALNT0226811,

LNCipedia: MMP25-AS1:25,

NONCODE: NONHSAT147935.2,

URS000034E0B5_9606 lncRNA 794 3

Ensembl: ENST00000572574 (view in UCSC) ,

LncBook: HSALNT0226819,

LNCipedia: MMP25-AS1:4,

URS00001479EC_9606 lncRNA 560 3

Ensembl: ENST00000572427 (view in UCSC) ,

LncBook: HSALNT0226831,

LNCipedia: MMP25-AS1:13,

MMP25-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MMP25-AS1 Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MMP25-AS1 Gene

No ASD Table

Relevant External Links for MMP25-AS1 Gene

GeneLoc Exon Structure for
MMP25-AS1

Expression for MMP25-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MMP25-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MMP25-AS1

genes like me logo Genes that share expression patterns with MMP25-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MMP25-AS1 Gene

Orthologs for MMP25-AS1 Gene

Evolution for MMP25-AS1 Gene

ENSEMBL:
Gene Tree for MMP25-AS1 (if available)
TreeFam:
Gene Tree for MMP25-AS1 (if available)

No data available for Orthologs for MMP25-AS1 Gene

Paralogs for MMP25-AS1 Gene

No data available for Paralogs for MMP25-AS1 Gene

Variants for MMP25-AS1 Gene

Additional dbSNP identifiers (rs#s) for MMP25-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MMP25-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv323e201 CNV deletion 23290073
esv2750390 CNV deletion 23290073
esv2750392 CNV deletion 23290073
esv2763127 CNV loss 21179565
esv3581939 CNV loss 25503493
esv3637645 CNV gain 21293372
esv3637646 CNV loss 21293372
esv3637647 CNV gain 21293372
nsv1115893 CNV deletion 24896259
nsv509589 CNV insertion 20534489
nsv571248 CNV loss 21841781
nsv833125 CNV loss 17160897
nsv952907 CNV deletion 24416366

Additional Variant Information for MMP25-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MMP25-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MMP25-AS1 Gene

Disorders for MMP25-AS1 Gene

No disorders were found for MMP25-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MMP25-AS1 Gene

Publications for MMP25-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for MMP25-AS1 Gene

Sources for MMP25-AS1 Gene