Aliases for MMP2-AS1 Gene

Subcategory (RNA class) for MMP2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MMP2-AS1 Gene

  • MMP2 Antisense RNA 1 2 3 5
  • MMP2-AS1 2 168
  • NONHSAG019510 92
  • HSALNG0111641 167

External Ids for MMP2-AS1 Gene

Summaries for MMP2-AS1 Gene

GeneCards Summary for MMP2-AS1 Gene

MMP2-AS1 (MMP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MMP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MMP2-AS1 Gene

Genomics for MMP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for MMP2-AS1 Gene

Promoters and enhancers for MMP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J055442 Promoter 0.8 Ensembl 35 +19.2 19196 1 RAD51 ZNF282 ZNF316 ARNT NBN ZNF777 IKZF1 BMI1 NFATC3 HDGF MMP2-AS1 LPCAT2 IRX6 ENSG00000274508 MMP2
GH16J055444 Promoter 0.8 Ensembl 35 +18.0 17996 1 ARNT NBN IKZF1 BMI1 NFATC3 TBX21 POLR2A NFATC1 ATF7 CREM MMP2-AS1 MMP2 LPCAT2 IRX6 ENSG00000274508
GH16J055437 Enhancer 0.6 ENCODE 36.5 +24.3 24313 0.8 CEBPG FOS CEBPB FOSL1 STAT3 EP300 NR2F1 POLR2A JUNB ATF7 MMP2-AS1 MMP2 LPCAT2 ENSG00000274508
GH16J055445 Enhancer 0.6 ENCODE 35 +17.3 17313 0.2 SPI1 IKZF1 NR2F1 NFATC3 TBX21 POLR2A PRDM4 ATF7 MYC MAX MMP2-AS1 MMP2 LPCAT2 ENSG00000274508
GH16J055439 Enhancer 0.5 FANTOM5 ENCODE 35.5 +23.0 22990 0.4 MYC MMP2-AS1 MMP2 LPCAT2 ENSG00000274508
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MMP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MMP2-AS1 Gene

Genomic Locations for MMP2-AS1 Gene
chr16:55,426,797-55,462,297
(GRCh38/hg38)
Size:
35,501 bases
Orientation:
Minus strand
chr16:55,461,470-55,496,209
(GRCh37/hg19)
Size:
34,740 bases
Orientation:
Minus strand

Genomic View for MMP2-AS1 Gene

Genes around MMP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MMP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MMP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MMP2-AS1 Gene

Proteins for MMP2-AS1 Gene

Post-translational modifications for MMP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MMP2-AS1 Gene

Domains & Families for MMP2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MMP2-AS1 Gene

Function for MMP2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MMP2-AS1 Gene

Localization for MMP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MMP2-AS1 Gene

Pathways & Interactions for MMP2-AS1 Gene

PathCards logo

SuperPathways for MMP2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MMP2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MMP2-AS1 Gene

Drugs & Compounds for MMP2-AS1 Gene

No Compound Related Data Available

Transcripts for MMP2-AS1 Gene

mRNA/cDNA for MMP2-AS1 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MMP2-AS1 Gene

No ASD Table

Relevant External Links for MMP2-AS1 Gene

GeneLoc Exon Structure for
MMP2-AS1

Expression for MMP2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MMP2-AS1 Gene

Orthologs for MMP2-AS1 Gene

Evolution for MMP2-AS1 Gene

ENSEMBL:
Gene Tree for MMP2-AS1 (if available)
TreeFam:
Gene Tree for MMP2-AS1 (if available)

No data available for Orthologs for MMP2-AS1 Gene

Paralogs for MMP2-AS1 Gene

No data available for Paralogs for MMP2-AS1 Gene

Variants for MMP2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MMP2-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
617534 Likely Pathogenic: Familial hypokalemia-hypomagnesemia 55,459,530(-) GAGCCGAGATTACACC

Additional dbSNP identifiers (rs#s) for MMP2-AS1 Gene

Additional Variant Information for MMP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MMP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MMP2-AS1 Gene

Disorders for MMP2-AS1 Gene

Additional Disease Information for MMP2-AS1

No disorders were found for MMP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MMP2-AS1 Gene

Publications for MMP2-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for MMP2-AS1 Gene

Sources for MMP2-AS1 Gene