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Aliases for MLIP-IT1 Gene

Subcategory (RNA class) for MLIP-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MLIP-IT1 Gene

  • MLIP Intronic Transcript 1 2 3 5
  • MLIP Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MLIP-IT1 Gene

Previous GeneCards Identifiers for MLIP-IT1 Gene

  • GC00U933915
  • GC06P053864

Summaries for MLIP-IT1 Gene

GeneCards Summary for MLIP-IT1 Gene

MLIP-IT1 (MLIP Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MLIP-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MLIP-IT1 Gene

Genomics for MLIP-IT1 Gene

GeneHancer (GH) Regulatory Elements for MLIP-IT1 Gene

Promoters and enhancers for MLIP-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I053998 Enhancer 0.5 ENCODE 558.5 -0.1 -128 1.1 JUND MAX HNF4A RAD21 YY1 MLIP-IT1 MLIP-AS1 LOC101927189 MLIP GC06P053984
GH06I053791 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.5 -204.0 -204022 5.8 FOXA2 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SLC30A9 KLF13 SP3 LRRC1 ENSG00000228614 KLHL31 MLIP-IT1 ENSG00000227885 PIR32511
GH06I053982 Enhancer 0.8 Ensembl ENCODE 18 -15.3 -15250 3 JUND POLR2A JUN STAT3 CEBPB FOSL2 FOS EP300 GC06P053984 MLIP MLIP-IT1 LOC101927189 MLIP-AS1 KLHL31 PIR57668
GH06I053825 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.2 -170.9 -170867 5.6 ELF3 TFAP4 PKNOX1 FOXA2 SAP130 ARNT FEZF1 ZNF644 BCL11B TEAD3 LOC101927189 MLIP-IT1 MLIP LRRC1 KLHL31 PIR32511 GC06M053813
GH06I053733 Enhancer 1 Ensembl ENCODE 9.7 -264.0 -264028 3 RAD21 ZNF335 ZNF366 SCRT2 ZNF143 FOS RUNX3 ELK4 ZNF654 ZNF362 KLHL31 MLIP-IT1 LRRC1 ENSG00000227885
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MLIP-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MLIP-IT1 Gene

Genomic Locations for MLIP-IT1 Gene
chr6:53,998,890-54,007,152
(GRCh38/hg38)
Size:
8,263 bases
Orientation:
Plus strand
chr6:53,863,688-53,871,950
(GRCh37/hg19)

Genomic View for MLIP-IT1 Gene

Genes around MLIP-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MLIP-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MLIP-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MLIP-IT1 Gene

Proteins for MLIP-IT1 Gene

Post-translational modifications for MLIP-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MLIP-IT1 Gene

Domains & Families for MLIP-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MLIP-IT1 Gene

Function for MLIP-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MLIP-IT1 Gene

Localization for MLIP-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MLIP-IT1 Gene

Pathways & Interactions for MLIP-IT1 Gene

SuperPathways for MLIP-IT1 Gene

No Data Available

Interacting Proteins for MLIP-IT1 Gene

Gene Ontology (GO) - Biological Process for MLIP-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MLIP-IT1 Gene

Drugs & Compounds for MLIP-IT1 Gene

No Compound Related Data Available

Transcripts for MLIP-IT1 Gene

mRNA/cDNA for MLIP-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MLIP-IT1 Gene

MLIP intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MLIP-IT1 Gene

No ASD Table

Relevant External Links for MLIP-IT1 Gene

GeneLoc Exon Structure for
MLIP-IT1
ECgene alternative splicing isoforms for
MLIP-IT1

Expression for MLIP-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MLIP-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for MLIP-IT1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x11.8), Skin - Sun Exposed (Lower leg) (x11.5), and Esophagus - Mucosa (x4.6).

SOURCE GeneReport for Unigene cluster for MLIP-IT1 Gene:

Hs.571169
genes like me logo Genes that share expression patterns with MLIP-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MLIP-IT1 Gene

Orthologs for MLIP-IT1 Gene

Evolution for MLIP-IT1 Gene

ENSEMBL:
Gene Tree for MLIP-IT1 (if available)
TreeFam:
Gene Tree for MLIP-IT1 (if available)

No data available for Orthologs for MLIP-IT1 Gene

Paralogs for MLIP-IT1 Gene

No data available for Paralogs for MLIP-IT1 Gene

Variants for MLIP-IT1 Gene

Sequence variations from dbSNP and Humsavar for MLIP-IT1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000091692 -- 54,001,289(+) T/C intron_variant
rs1000401003 -- 54,002,067(+) G/T intron_variant
rs1000577823 -- 54,007,277(+) A/G downstream_transcript_variant
rs1000989619 -- 54,006,619(+) T/C intron_variant
rs1001625970 -- 54,001,694(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MLIP-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv515808 CNV loss 19592680
nsv1034955 CNV gain 25217958
nsv1018062 CNV gain 25217958
esv3609039 CNV loss 21293372
esv2763552 CNV loss 21179565
esv2759431 CNV gain+loss 17122850
dgv3316n106 CNV deletion 24896259

Additional Variant Information for MLIP-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MLIP-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MLIP-IT1 Gene

Disorders for MLIP-IT1 Gene

Additional Disease Information for MLIP-IT1

No disorders were found for MLIP-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MLIP-IT1 Gene

Publications for MLIP-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for MLIP-IT1 Gene

Sources for MLIP-IT1 Gene

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