Aliases for MKX-AS1 Gene

Subcategory (RNA class) for MKX-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for MKX-AS1 Gene

  • MKX Antisense RNA 1 2 3 5
  • MKX-AS1 2 170
  • NONHSAG005468 94
  • HSALNG0076876 169

External Ids for MKX-AS1 Gene

Summaries for MKX-AS1 Gene

GeneCards Summary for MKX-AS1 Gene

MKX-AS1 (MKX Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MKX-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MKX-AS1 Gene

Genomics for MKX-AS1 Gene

GeneHancer (GH) Regulatory Elements for MKX-AS1 Gene

Promoters and enhancers for MKX-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J027741 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.3 -348 5.1 CTCF RAD21 SP1 CEBPG CREM RELA REST NRF1 TARDBP CEBPB MKX MKX-AS1 piR-42491-022
GH10J028364 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 10.2 +622.7 622706 5.2 ZNF24 ETV6 HLF ELF3 SP1 CEBPG PPARG HNF1A KAT8 IKZF1 MPP7 MKX MKX-AS1 WAC ZNF101P1 piR-52079-026
GH10J028177 Enhancer 1 FANTOM5 ENCODE dbSUPER 10.9 +434.0 434017 1.9 CTCF ZBTB6 RAD21 ZNF652 REST PRDM10 TRIM22 IKZF2 ZBTB17 SMC3 MKX MKX-AS1 LRRC37A6P RF00017-624 piR-38051-039 MPP7
GH10J028241 Enhancer 0.9 Ensembl ENCODE dbSUPER 11 +498.3 498286 2.6 CTCF CREB1 HLF RAD21 SP7 ZNF384 REST TRIM22 CBFB RUNX3 MPP7 MKX MKX-AS1 lnc-ARMC4-3 piR-39858-051
GH10J028179 Enhancer 0.7 ENCODE dbSUPER 10.9 +435.1 435062 0.2 CTCF RAD21 ZNF652 REST TRIM22 SMC3 MKX-AS1 MKX LRRC37A6P RF00017-624 piR-38051-039 MPP7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MKX-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MKX-AS1 Gene

Genomic Locations for MKX-AS1 Gene
chr10:27,744,615-27,767,880
(GRCh38/hg38)
Size:
23,266 bases
Orientation:
Plus strand
chr10:28,033,715-28,056,723
(GRCh37/hg19)
Size:
23,009 bases
Orientation:
Plus strand

Genomic View for MKX-AS1 Gene

Genes around MKX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MKX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MKX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MKX-AS1 Gene

Proteins for MKX-AS1 Gene

Post-translational modifications for MKX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKX-AS1 Gene

Domains & Families for MKX-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MKX-AS1 Gene

Function for MKX-AS1 Gene

Phenotypes From GWAS Catalog for MKX-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MKX-AS1 Gene

Localization for MKX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MKX-AS1 Gene

Pathways & Interactions for MKX-AS1 Gene

PathCards logo

SuperPathways for MKX-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MKX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MKX-AS1 Gene

Drugs & Compounds for MKX-AS1 Gene

No Compound Related Data Available

Transcripts for MKX-AS1 Gene

mRNA/cDNA for MKX-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) NONCODE transcripts :
(3) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MKX-AS1 Gene

No ASD Table

Relevant External Links for MKX-AS1 Gene

GeneLoc Exon Structure for
MKX-AS1
ECgene alternative splicing isoforms for
MKX-AS1

Expression for MKX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MKX-AS1 Gene

genes like me logo Genes that share expression patterns with MKX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MKX-AS1 Gene

Orthologs for MKX-AS1 Gene

Evolution for MKX-AS1 Gene

ENSEMBL:
Gene Tree for MKX-AS1 (if available)
TreeFam:
Gene Tree for MKX-AS1 (if available)

No data available for Orthologs for MKX-AS1 Gene

Paralogs for MKX-AS1 Gene

No data available for Paralogs for MKX-AS1 Gene

Variants for MKX-AS1 Gene

Sequence variations from dbSNP and Humsavar for MKX-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000112451 -- 27,755,654(+) C/T intron_variant
rs1000405595 -- 27,754,562(+) G/T intron_variant
rs1000498155 -- 27,766,528(+) T/A intron_variant
rs1000692689 -- 27,760,499(+) T/C intron_variant
rs1000729248 -- 27,764,606(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MKX-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2668102 CNV deletion 23128226
esv2677707 CNV deletion 23128226
esv2734606 CNV deletion 23290073
esv2734672 CNV deletion 23290073
esv2734683 CNV deletion 23290073
esv2734695 CNV deletion 23290073
esv2734706 CNV deletion 23290073
esv2734717 CNV deletion 23290073
esv2734728 CNV deletion 23290073
esv4816 CNV loss 18987735
nsv1150036 CNV insertion 26484159
nsv831813 CNV loss 17160897

Additional Variant Information for MKX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MKX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MKX-AS1 Gene

Disorders for MKX-AS1 Gene

Additional Disease Information for MKX-AS1

No disorders were found for MKX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MKX-AS1 Gene

Publications for MKX-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

Products for MKX-AS1 Gene

Sources for MKX-AS1 Gene