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MKRN9P Gene(Pseudogene)

Makorin Ring Finger Protein 9, Pseudogene

GCID:
GC12M087782
GIFtS:
18
Genes Participants
UDN Logo

Aliases for MKRN9P Gene

Subcategory (RNA class) for MKRN9P Gene

lncRNA

Aliases for MKRN9P Gene

  • Makorin Ring Finger Protein 9, Pseudogene 2 3
  • Makorin Ring Finger Protein Pseudogene 6 2 3 4
  • ZNF127L3 3 4
  • MKRNP6 3 4
  • MKRN5 3 4
  • MKRN9 3 4
  • RNF65 3 4
  • Makorin, Ring Finger Protein, 1 Pseudogene 3
  • Makorin Ring Finger Protein Pseudogene 9 4
  • Makorin, Ring Finger Protein, 5 3
  • Makorin, Ring Finger Protein, 9 3
  • Putative RING Finger Protein 65 4
  • Zinc Finger Protein 127-Like 3 3
  • Makorin Ring Finger Protein 5 2

External Ids for MKRN9P Gene

ORGUL Members for MKRN9P Gene

Previous HGNC Symbols for MKRN9P Gene

  • ZNF127L3
  • MKRN5
  • MKRNP6

Previous GeneCards Identifiers for MKRN9P Gene

  • GC12M088179
  • GC12M088180
  • GC12M085243
  • GC12M088181

Summaries for MKRN9P Gene

GeneCards Summary for MKRN9P Gene

MKRN9P (Makorin Ring Finger Protein 9, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for MKRN9P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MKRN9P Gene

Genomics for MKRN9P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for MKRN9P Gene

Promoters and enhancers for MKRN9P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I087779 Enhancer 0.6 ENCODE 0.4 +5.5 5512 0.2 CEBPB REST EP300 SP1 GATA3 JUND ATF3 STAT3 FOSL2 PRDM1 MKRN9P ENSG00000258173
GH12I087755 Enhancer 0.5 ENCODE 0.3 +28.2 28230 2.3 SP1 CEBPB FOSL2 FOS EP300 ENSG00000258173 MKRN9P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MKRN9P on UCSC Golden Path with GeneCards custom track

Genomic Locations for MKRN9P Gene

Genomic Locations for MKRN9P Gene
chr12:87,782,163-87,784,711
(GRCh38/hg38)
Size:
2,549 bases
Orientation:
Minus strand
chr12:88,175,940-88,178,488
(GRCh37/hg19)

Genomic View for MKRN9P Gene

Genes around MKRN9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MKRN9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MKRN9P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MKRN9P Gene

Proteins for MKRN9P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for MKRN9P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV0-MKRN5_HUMAN
    Recommended name:
    Putative makorin-5
    Protein Accession:
    Q6NVV0

    Protein attributes for MKRN9P Gene

    Size:
    33 amino acids
    Molecular mass:
    3805 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MKRN9P Gene

Post-translational modifications for MKRN9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKRN9P Gene

Domains & Families for MKRN9P Gene

Gene Families for MKRN9P Gene

HGNC:

Protein Domains for MKRN9P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MKRN9P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MKRN9P: view

No data available for UniProtKB/Swiss-Prot for MKRN9P Gene

Function for MKRN9P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MKRN9P Gene

Localization for MKRN9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MKRN9P Gene

Pathways & Interactions for MKRN9P Gene

SuperPathways for MKRN9P Gene

PathCards logo More details on SuperPathways for MKRN9P
No Data Available

Interacting Proteins for MKRN9P Gene

Gene Ontology (GO) - Biological Process for MKRN9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MKRN9P Gene

Drugs & Compounds for MKRN9P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MKRN9P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MKRN9P Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MKRN9P Gene

Makorin ring finger protein 9, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MKRN9P Gene

No ASD Table

Relevant External Links for MKRN9P Gene

GeneLoc Exon Structure for
MKRN9P
ECgene alternative splicing isoforms for
MKRN9P

Expression for MKRN9P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MKRN9P Gene

mRNA expression in normal human tissues for MKRN9P Gene
mRNA expression by GTEx for MKRN9P Gene

mRNA differential expression in normal tissues according to GTEx for MKRN9P Gene

This gene is overexpressed in Testis (x45.8).

NURSA nuclear receptor signaling pathways regulating expression of MKRN9P Gene:

MKRN9P

SOURCE GeneReport for Unigene cluster for MKRN9P Gene:

Hs.572212
genes like me logo Genes that share expression patterns with MKRN9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MKRN9P Gene

Orthologs for MKRN9P Gene

Evolution for MKRN9P Gene

ENSEMBL:
Gene Tree for MKRN9P (if available)
TreeFam:
Gene Tree for MKRN9P (if available)

No data available for Orthologs for MKRN9P Gene

Paralogs for MKRN9P Gene

(1) SIMAP similar genes for MKRN9P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with MKRN9P: view

No data available for Paralogs for MKRN9P Gene

Variants for MKRN9P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for MKRN9P Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000176102 -- 87,783,350(-) C/T non_coding_transcript_variant
rs1000244215 -- 87,783,101(-) C/T non_coding_transcript_variant
rs1001463784 -- 87,785,698(-) AAGAAG/AAG upstream_transcript_variant
rs1001585064 -- 87,782,606(-) A/G downstream_transcript_variant
rs1002660176 -- 87,784,993(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MKRN9P Gene

Variant ID Type Subtype PubMed ID
esv3892241 CNV gain 25118596
nsv483111 CNV loss 15286789
nsv832477 CNV loss 17160897
nsv975517 CNV duplication 23825009

Additional Variant Information for MKRN9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MKRN9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MKRN9P Gene

Disorders for MKRN9P Gene

Additional Disease Information for MKRN9P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MKRN9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MKRN9P Gene

Publications for MKRN9P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MKRN9P Gene

Sources for MKRN9P Gene

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