MKRN7P Gene (Pseudogene)

Makorin Ring Finger Protein 7, Pseudogene

GC20M046463
GIFtS:
14

Aliases for MKRN7P Gene

Aliases for MKRN7P Gene

  • Makorin Ring Finger Protein 7, Pseudogene 2 3 5
  • Makorin Ring Finger Protein Pseudogene 3 2 3
  • Zinc Finger Protein 127-Like 5 3
  • DJ981L23.2 3
  • ZNF127L5 3
  • MKRNP3 3

External Ids for MKRN7P Gene

Previous HGNC Symbols for MKRN7P Gene

  • ZNF127L5
  • MKRNP3

Previous GeneCards Identifiers for MKRN7P Gene

  • GC20M045093

Summaries for MKRN7P Gene

GeneCards Summary for MKRN7P Gene

MKRN7P (Makorin Ring Finger Protein 7, Pseudogene) is a Pseudogene.

Additional gene information for MKRN7P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MKRN7P Gene

Genomics for MKRN7P Gene

GeneHancer (GH) Regulatory Elements for MKRN7P Gene

Promoters and enhancers for MKRN7P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J046478 Enhancer 0.2 Ensembl 750.6 -1.8 -1769 0.4 MKRN7P ZNF334 ELMO2 ZNF840P lnc-SLC2A10-6 ENSG00000283757 lnc-ELMO2-40
GH20J046404 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 15.7 +70.7 70731 4.2 SP1 RBPJ CEBPZ FOS CREB1 MIXL1 NFYC L3MBTL2 POLR2A NFIB ELMO2 LOC105372633 NCOA5 SLC35C2 TP53RK SLC12A5 MKRN7P PCIF1 SPATA25 ZNF335
GH20J047342 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -875.9 -875927 21 SP1 FOXA1 LCORL MLX RBPJ SMARCE1 POLR2A USF2 NR2F1 NR2F6 LOC101927377 ZMYND8 NCOA3 ENSG00000229853 SLC35C2 TP53RK ZNF663P ZNF334 MKRN7P RPL35AP
GH20J046458 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 16.7 +18.1 18082 1.5 SP1 POLR2A NRF1 ZNF143 ZFP64 CBFA2T3 ELMO2 ZNF663P MKRN7P lnc-SLC2A10-9 lnc-ELMO2-40 ENSG00000283757
GH20J045933 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 +541.0 540984 6.5 SIN3A ZNF24 ZBTB40 SP1 CTCF SIX5 ZBTB6 MLX RBPJ SMARCE1 PCIF1 ENSG00000285796 NCOA5 UBE2C SLC12A5 SPATA25 ZNF335 PLTP SLC35C2 ZNF663P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MKRN7P on UCSC Golden Path with GeneCards custom track

Genomic Locations for MKRN7P Gene

Genomic Locations for MKRN7P Gene
chr20:46,463,660-46,477,232
(GRCh38/hg38)
Size:
13,573 bases
Orientation:
Minus strand
chr20:45,092,299-45,093,931
(GRCh37/hg19)
Size:
1,633 bases
Orientation:
Minus strand

Genomic View for MKRN7P Gene

Genes around MKRN7P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MKRN7P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MKRN7P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MKRN7P Gene

Proteins for MKRN7P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MKRN7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKRN7P Gene

Domains & Families for MKRN7P Gene

Gene Families for MKRN7P Gene

HGNC:
genes like me logo Genes that share domains with MKRN7P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MKRN7P Gene

Function for MKRN7P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MKRN7P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MKRN7P Gene

Localization for MKRN7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MKRN7P Gene

Pathways & Interactions for MKRN7P Gene

PathCards logo

SuperPathways for MKRN7P Gene

No Data Available

Gene Ontology (GO) - Biological Process for MKRN7P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MKRN7P Gene

Drugs & Compounds for MKRN7P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MKRN7P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MKRN7P Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MKRN7P Gene

No ASD Table

Relevant External Links for MKRN7P Gene

GeneLoc Exon Structure for
MKRN7P
ECgene alternative splicing isoforms for
MKRN7P

Expression for MKRN7P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MKRN7P Gene

mRNA expression in normal human tissues for MKRN7P Gene
mRNA expression by GTEx for MKRN7P GenemRNA expression by BioGPS for MKRN7P Gene

mRNA differential expression in normal tissues according to GTEx for MKRN7P Gene

This gene is overexpressed in Brain - Cerebellum (x4.9) and Brain - Cerebellar Hemisphere (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of MKRN7P Gene:

MKRN7P

SOURCE GeneReport for Unigene cluster for MKRN7P Gene:

Hs.717103
genes like me logo Genes that share expression patterns with MKRN7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MKRN7P Gene

Orthologs for MKRN7P Gene

Evolution for MKRN7P Gene

ENSEMBL:
Gene Tree for MKRN7P (if available)
TreeFam:
Gene Tree for MKRN7P (if available)

No data available for Orthologs for MKRN7P Gene

Paralogs for MKRN7P Gene

No data available for Paralogs for MKRN7P Gene

Variants for MKRN7P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for MKRN7P Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000214014 -- 46,465,102(-) A/C/G non_coding_transcript_variant
rs1000329843 -- 46,464,937(-) T/C non_coding_transcript_variant
rs1000383 -- 46,464,282(-) G/A/T non_coding_transcript_variant
rs1000701417 -- 46,465,124(-) T/C non_coding_transcript_variant
rs1001751757 -- 46,465,587(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MKRN7P Gene

Variant ID Type Subtype PubMed ID
nsv1058633 CNV loss 25217958
nsv833994 CNV gain 17160897

Additional Variant Information for MKRN7P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MKRN7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MKRN7P Gene

Disorders for MKRN7P Gene

Additional Disease Information for MKRN7P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MKRN7P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MKRN7P Gene

Publications for MKRN7P Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

ExternalLinks

View latest publications for MKRN7P gene in Mastermind

Products for MKRN7P Gene

Sources for MKRN7P Gene