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Aliases for MKLN1-AS Gene

Subcategory (RNA class) for MKLN1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MKLN1-AS Gene

  • MKLN1 Antisense RNA 2 3 5
  • MKLN1 Antisense RNA 2 2 3
  • MKLN1-AS2 3

External Ids for MKLN1-AS Gene

Previous HGNC Symbols for MKLN1-AS Gene

  • MKLN1-AS2

Previous GeneCards Identifiers for MKLN1-AS Gene

  • GC07M131001

Summaries for MKLN1-AS Gene

GeneCards Summary for MKLN1-AS Gene

MKLN1-AS (MKLN1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MKLN1-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MKLN1-AS Gene

Genomics for MKLN1-AS Gene

GeneHancer (GH) Regulatory Elements for MKLN1-AS Gene

Promoters and enhancers for MKLN1-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I131326 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.3 -321 4.1 DMAP1 YY1 ZNF213 ZNF416 ZNF548 SP3 MEF2D ZNF610 NBN WT1 MKLN1 MKLN1-AS COPG2 ENSG00000270953 LINC-PINT GC07P131339
GH07I130908 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +412.2 412197 15.2 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 IRF4 GC07P130916 PIR43822 COPG2 MIR29A RNU6-1010P LINC-PINT MKLN1-AS LINC00513 TMEM209 MKLN1
GH07I131104 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +219.8 219820 8.6 CLOCK DMAP1 IRF4 YY1 ZNF213 ZNF143 SP3 MEF2D SSRP1 GLIS1 MKLN1 LINC-PINT MKLN1-AS GC07M131055 RNU6-1010P
GH07I131511 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 -184.9 -184874 2.9 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 IRF4 ZNF48 ETS1 ARID2 MKLN1-AS RPL31P36 GC07M131484 ENSG00000273489 PODXL
GH07I131652 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.3 -325.7 -325667 2.1 HDGF ZNF493 SIN3A GLI4 IRF4 CBX5 ARID2 ZNF207 ZNF143 KLF7 GC07P131655 COPG2 MKLN1 MKLN1-AS PIR56881
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MKLN1-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for MKLN1-AS Gene

Genomic Locations for MKLN1-AS Gene
chr7:131,309,744-131,328,222
(GRCh38/hg38)
Size:
18,479 bases
Orientation:
Minus strand
chr7:130,994,503-131,012,981
(GRCh37/hg19)

Genomic View for MKLN1-AS Gene

Genes around MKLN1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MKLN1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MKLN1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MKLN1-AS Gene

Proteins for MKLN1-AS Gene

Post-translational modifications for MKLN1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKLN1-AS Gene

Domains & Families for MKLN1-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MKLN1-AS Gene

Function for MKLN1-AS Gene

Phenotypes From GWAS Catalog for MKLN1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MKLN1-AS Gene

Localization for MKLN1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MKLN1-AS Gene

Pathways & Interactions for MKLN1-AS Gene

SuperPathways for MKLN1-AS Gene

No Data Available

Interacting Proteins for MKLN1-AS Gene

Gene Ontology (GO) - Biological Process for MKLN1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MKLN1-AS Gene

Drugs & Compounds for MKLN1-AS Gene

No Compound Related Data Available

Transcripts for MKLN1-AS Gene

mRNA/cDNA for MKLN1-AS Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MKLN1-AS Gene

No ASD Table

Relevant External Links for MKLN1-AS Gene

GeneLoc Exon Structure for
MKLN1-AS
ECgene alternative splicing isoforms for
MKLN1-AS

Expression for MKLN1-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MKLN1-AS Gene

genes like me logo Genes that share expression patterns with MKLN1-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MKLN1-AS Gene

Orthologs for MKLN1-AS Gene

Evolution for MKLN1-AS Gene

ENSEMBL:
Gene Tree for MKLN1-AS (if available)
TreeFam:
Gene Tree for MKLN1-AS (if available)

No data available for Orthologs for MKLN1-AS Gene

Paralogs for MKLN1-AS Gene

No data available for Paralogs for MKLN1-AS Gene

Variants for MKLN1-AS Gene

Sequence variations from dbSNP and Humsavar for MKLN1-AS Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000003618 -- 131,311,574(-) T/G intron_variant
rs1000034967 -- 131,311,873(-) T/C intron_variant
rs1000076557 -- 131,328,678(-) G/A upstream_transcript_variant
rs1000292247 -- 131,320,824(-) A/T intron_variant
rs1000466722 -- 131,327,361(-) T/C intron_variant

Additional Variant Information for MKLN1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MKLN1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MKLN1-AS Gene

Disorders for MKLN1-AS Gene

Additional Disease Information for MKLN1-AS

No disorders were found for MKLN1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MKLN1-AS Gene

Publications for MKLN1-AS Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for MKLN1-AS Gene

Sources for MKLN1-AS Gene

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