Aliases for MIRLET7BHG Gene

Data sources for MIRLET7BHG Gene:

RNA type for MIRLET7BHG Gene

lncRNA

Aliases for MIRLET7BHG Gene

External Ids for MIRLET7BHG Gene

Previous GeneCards Identifiers for MIRLET7BHG Gene

  • GC00U927125
  • GC22P046482

Summaries for MIRLET7BHG Gene

GeneCards Summary for MIRLET7BHG Gene

MIRLET7BHG (MIRLET7B Host Gene) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Metastatic brain tumor.

Rfam classification for MIRLET7BHG Gene

Additional gene information for MIRLET7BHG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIRLET7BHG Gene

Genomics for MIRLET7BHG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIRLET7BHG Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIRLET7BHG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIRLET7BHG Gene

Latest Assembly
chr22:46,053,869-46,113,928
(GRCh38/hg38)
Size:
60,060 bases
Orientation:
Plus strand

Previous Assembly
chr22:46,481,877-46,509,808
(GRCh37/hg19 by Entrez Gene)
Size:
27,932 bases
Orientation:
Plus strand

chr22:46,449,749-46,509,808
(GRCh37/hg19 by Ensembl)
Size:
60,060 bases
Orientation:
Plus strand

Genomic View for MIRLET7BHG Gene

Genes around MIRLET7BHG on UCSC Golden Path with GeneCards custom track
MIRLET7BHG in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIRLET7BHG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIRLET7BHG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIRLET7BHG Gene

Proteins for MIRLET7BHG Gene

Post-translational modifications for MIRLET7BHG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIRLET7BHG Gene

Domains & Families for MIRLET7BHG Gene

Gene Families for MIRLET7BHG Gene

genes like me logo Genes that share domains with MIRLET7BHG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIRLET7BHG Gene

Function for MIRLET7BHG Gene

Phenotypes From GWAS Catalog for MIRLET7BHG Gene

Phenotypes for MIRLET7BHG Gene

GenomeRNAi human phenotypes for MIRLET7BHG:
genes like me logo Genes that share phenotypes with MIRLET7BHG: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIRLET7BHG Gene

Localization for MIRLET7BHG Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIRLET7BHG gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIRLET7BHG Gene

Pathways & Interactions for MIRLET7BHG Gene

PathCards logo

SuperPathways for MIRLET7BHG Gene

SuperPathway Contained pathways
1 Metastatic brain tumor
genes like me logo Genes that share pathways with MIRLET7BHG: view

Pathways by source for MIRLET7BHG Gene

1 BioSystems pathway for MIRLET7BHG Gene

Gene Ontology (GO) - Biological Process for MIRLET7BHG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with MIRLET7BHG: view

No data available for Interacting Proteins and SIGNOR curated interactions for MIRLET7BHG Gene

Drugs & Compounds for MIRLET7BHG Gene

No Compound Related Data Available

Transcripts for MIRLET7BHG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIRLET7BHG Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075C708_9606 lncRNA 4723 3

RefSeq: NR_027033,

LNCipedia: MIRLET7BHG:8,

NONCODE: NONHSAT192488.1,

URS000075B158_9606 lncRNA 4566 3

RefSeq: NR_110479,

LNCipedia: MIRLET7BHG:9,

NONCODE: NONHSAT192489.1,

URS00007D1953_9606 lncRNA 494 3

Ensembl: ENST00000443490 (view in UCSC) ,

LNCipedia: MIRLET7BHG:7,

NONCODE: NONHSAT192487.1,

URS00007D1D78_9606 lncRNA 4560 2

Ensembl: ENST00000360737 (view in UCSC) ,

LNCipedia: MIRLET7BHG:11,

URS00007C412E_9606 lncRNA 2270 2

Ensembl: ENST00000435439 (view in UCSC) ,

LNCipedia: MIRLET7BHG:10,

MIRLET7BHG in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIRLET7BHG Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for MIRLET7BHG

Alternative Splicing Database (ASD) splice patterns (SP) for MIRLET7BHG Gene

No ASD Table

Relevant External Links for MIRLET7BHG Gene

GeneLoc Exon Structure for
MIRLET7BHG

Expression for MIRLET7BHG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIRLET7BHG Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIRLET7BHG

SOURCE GeneReport for Unigene cluster for MIRLET7BHG Gene:

Hs.235838
genes like me logo Genes that share expression patterns with MIRLET7BHG: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIRLET7BHG Gene

Orthologs for MIRLET7BHG Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIRLET7BHG Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 30
  • 96 (a)
OneToOne
Species where no ortholog for MIRLET7BHG was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for MIRLET7BHG Gene

ENSEMBL:
Gene Tree for MIRLET7BHG (if available)
TreeFam:
Gene Tree for MIRLET7BHG (if available)
Alliance of Genome Resources:
Additional Orthologs for MIRLET7BHG

Paralogs for MIRLET7BHG Gene

No data available for Paralogs for MIRLET7BHG Gene

Variants for MIRLET7BHG Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIRLET7BHG Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIRLET7BHG Gene

Variant ID Type Subtype PubMed ID
dgv2469n106 OTHER inversion 24896259
dgv776n67 CNV gain 20364138
dgv777n67 CNV gain 20364138
dgv8124n54 CNV loss 21841781
esv1011338 CNV deletion 20482838
esv1346561 CNV insertion 17803354
esv25384 CNV gain 19812545
esv2661950 CNV deletion 23128226
esv2724423 CNV deletion 23290073
esv3307110 CNV mobile element insertion 20981092
esv3438171 CNV insertion 20981092
nsv1152661 OTHER inversion 26484159
nsv459904 CNV loss 19166990
nsv459905 CNV loss 19166990
nsv471212 CNV loss 18288195
nsv471213 CNV gain 18288195
nsv516279 CNV loss 19592680
nsv589132 CNV loss 21841781
nsv589133 CNV loss 21841781
nsv829281 CNV gain 20364138
nsv829285 CNV gain 20364138
nsv834224 CNV loss 17160897

Additional Variant Information for MIRLET7BHG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIRLET7BHG
Leiden Open Variation Database (LOVD)
MIRLET7BHG

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIRLET7BHG Gene

Disorders for MIRLET7BHG Gene

Additional Disease Information for MIRLET7BHG

No disorders were found for MIRLET7BHG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIRLET7BHG Gene

Publications for MIRLET7BHG Gene

  1. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M … Rinn JL (eLife 2013) 2 3
  2. Cytoplasmic sequestration of HDAC7 from mitochondrial and nuclear compartments upon initiation of apoptosis. (PMID: 15364908) Bakin RE … Jung MO (The Journal of biological chemistry 2004) 2 3
  3. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  5. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. (PMID: 26760575) Uren PJ … Penalva LO (RNA biology 2016) 3

Products for MIRLET7BHG Gene

Sources for MIRLET7BHG Gene