MIRLET7A1 Gene (RNA Gene)

MicroRNA Let-7a-1

GC09P094175
GIFtS:
21
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIRLET7A1 Gene

Data sources for MIRLET7A1 Gene:

RNA type for MIRLET7A1 Gene

miRNA

Aliases for MIRLET7A1 Gene

External Ids for MIRLET7A1 Gene

Previous HGNC Symbols for MIRLET7A1 Gene

  • MIRNLET7A1

Previous GeneCards Identifiers for MIRLET7A1 Gene

  • GC09P095981
  • GC09P096938

Summaries for MIRLET7A1 Gene

Entrez Gene Summary for MIRLET7A1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIRLET7A1 Gene

MIRLET7A1 (MicroRNA Let-7a-1) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIRLET7A1 include Colorectal Cancer and Pituitary Adenoma. Among its related pathways are MicroRNAs in cancer and Metastatic brain tumor.

Rfam classification for MIRLET7A1 Gene

Additional gene information for MIRLET7A1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIRLET7A1 Gene

Genomics for MIRLET7A1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIRLET7A1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIRLET7A1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIRLET7A1 Gene

Latest Assembly
chr9:94,175,956-94,176,037
(GRCh38/hg38)
Size:
82 bases
Orientation:
Plus strand

Previous Assembly
chr9:96,938,239-96,938,318
(GRCh37/hg19 by Entrez Gene)
Size:
80 bases
Orientation:
Plus strand

chr9:96,938,234-96,938,325
(GRCh37/hg19 by Ensembl)
Size:
92 bases
Orientation:
Plus strand

Genomic View for MIRLET7A1 Gene

Genes around MIRLET7A1 on UCSC Golden Path with GeneCards custom track
MIRLET7A1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIRLET7A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIRLET7A1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIRLET7A1 Gene

Proteins for MIRLET7A1 Gene

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  1. Antibodies for research
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Post-translational modifications for MIRLET7A1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIRLET7A1 Gene

Domains & Families for MIRLET7A1 Gene

Gene Families for MIRLET7A1 Gene

HGNC:
genes like me logo Genes that share domains with MIRLET7A1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIRLET7A1 Gene

Function for MIRLET7A1 Gene

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  3. miRNA products for research
  4. Inhibitory RNAs for research
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  6. Cell Lines for research

Gene Ontology (GO) - Molecular Function for MIRLET7A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 19878981
genes like me logo Genes that share ontologies with MIRLET7A1: view

CRISPR products for research

miRNA products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIRLET7A1 Gene

Localization for MIRLET7A1 Gene

Gene Ontology (GO) - Cellular Components for MIRLET7A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space HDA 18766170
GO:0070062 extracellular exosome IDA 31926946
GO:1903561 extracellular vesicle HDA 28798470
genes like me logo Genes that share ontologies with MIRLET7A1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIRLET7A1 Gene

Pathways & Interactions for MIRLET7A1 Gene

genes like me logo Genes that share pathways with MIRLET7A1: view

Pathways by source for MIRLET7A1 Gene

2 BioSystems pathways for MIRLET7A1 Gene
1 KEGG pathway for MIRLET7A1 Gene

Gene Ontology (GO) - Biological Process for MIRLET7A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IDA,IEA --
GO:0035278 miRNA mediated inhibition of translation IDA 17671087
GO:0070104 negative regulation of interleukin-6-mediated signaling pathway IDA 19878981
GO:0098806 deadenylation involved in gene silencing by miRNA IMP 17671087
genes like me logo Genes that share ontologies with MIRLET7A1: view

No data available for Interacting Proteins and SIGNOR curated interactions for MIRLET7A1 Gene

Drugs & Compounds for MIRLET7A1 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for MIRLET7A1 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIRLET7A1 Gene

GeneCaRNA:The Human ncRNA Database 2021 Publication

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000416056_9606 miRNA 22 6

RefSeq: NR_029476, NR_029477, NR_029478,

LncBase: hsa-let-7a-5p,

miRBase: MIMAT0000062,

MirGeneDB: Hsa-Let-7-P1a_5p, Hsa-Let-7-P2a1_5p, Hsa-Let-7-P2a2_5p,

TarBase: hsa-let-7a-5p,

ENA: View 8 records in RNAcentral

URS000004F5D8_9606 miRNA 21 6

RefSeq: NR_029476, NR_029478,

LncBase: hsa-let-7a-3p,

miRBase: MIMAT0004481,

MirGeneDB: Hsa-Let-7-P2a1_3p, Hsa-Let-7-P2a2_3p,

TarBase: hsa-let-7a-3p,

ENA: LM380162.1:1..21:ncRNA, LM608149.1:57..77:ncRNA, LM608151.1:52..72:ncRNA,

URS00005EB5B7_9606 pre_miRNA 80 4

RefSeq: NR_029476,

Ensembl: ENST00000362295 (view in UCSC) ,

miRBase: MI0000060,

ENA: LM608149.1:1..80:precursor_RNA,

URS00001DF052_9606 pre_miRNA 82 1

Rfam: RF00027,

URS0001BC0C30_9606 pre_miRNA 81 1

Rfam: RF00027,

MIRLET7A1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIRLET7A1 Gene

2 NCBI additional mRNA sequence :

CRISPR products for research

miRNA products for research

Alternative Splicing Database (ASD) splice patterns (SP) for MIRLET7A1 Gene

No ASD Table

Relevant External Links for MIRLET7A1 Gene

GeneLoc Exon Structure for
MIRLET7A1

Expression for MIRLET7A1 Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIRLET7A1 Gene

mRNA expression in normal human tissues for MIRLET7A1 Gene
mRNA expression by GTEx for MIRLET7A1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIRLET7A1

genes like me logo Genes that share expression patterns with MIRLET7A1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIRLET7A1 Gene

Orthologs for MIRLET7A1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIRLET7A1 Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
 Mammalia -- 30
  • 100 (a)
 OneToOne
Chimpanzee
(Pan troglodytes)
 Mammalia ptr-let-7a-1 30
  • 100 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia bta-let-7a-1 30
  • 97 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia -- 30
  • 89 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia mdo-let-7a-1 30
  • 86 (a)
 ManyToMany
Mouse
(Mus musculus)
 Mammalia Mirlet7a-1 30
  • 80 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves gga-let-7k 30
  • 75 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia aca-let-7a 30
  • 91 (a)
 ManyToMany
-- 30
  • 76 (a)
 ManyToMany
aca-let-7e 30
  • 65 (a)
 ManyToMany
Zebrafish
(Danio rerio)
 Actinopterygii dre-let-7a-3 30
  • 67 (a)
 ManyToMany
CR354430.2 30
  • 67 (a)
 ManyToMany
dre-let-7e 30
  • 62 (a)
 ManyToMany
Species where no ortholog for MIRLET7A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for MIRLET7A1 Gene

ENSEMBL:
Gene Tree for MIRLET7A1 (if available)
TreeFam:
Gene Tree for MIRLET7A1 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIRLET7A1

Paralogs for MIRLET7A1 Gene

No data available for Paralogs for MIRLET7A1 Gene

Variants for MIRLET7A1 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIRLET7A1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIRLET7A1 Gene

Variant ID Type Subtype PubMed ID
nsv831655 CNV gain 17160897

Additional Variant Information for MIRLET7A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIRLET7A1
Leiden Open Variation Database (LOVD)
MIRLET7A1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIRLET7A1 Gene

Disorders for MIRLET7A1 Gene

MalaCards: The human disease database

(49) MalaCards diseases for MIRLET7A1 Gene - From: MID, COP, and GCD

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
pituitary adenoma
  • adenoma of the pituitary gland
oral squamous cell carcinoma
  • mouth squamous cell carcinoma
cholesteatoma of middle ear
  • cholesteatoma
purulent labyrinthitis
  • acute suppurative labyrinthitis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIRLET7A1

Human Genome Epidemiology Navigator
(HuGE)
Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with MIRLET7A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIRLET7A1 Gene

Publications for MIRLET7A1 Gene

  1. Novel genetic variants in miR-191 gene and familial ovarian cancer. (PMID: 20167074) Shen J … Zhao H (BMC cancer 2010) 3 40
  2. let-7 microRNA functions as a potential growth suppressor in human colon cancer cells. (PMID: 16651716) Akao Y … Naoe T (Biological & pharmaceutical bulletin 2006) 3 72
  3. Pancreatic circulating tumor cell profiling identifies LIN28B as a metastasis driver and drug target. (PMID: 32620742) Franses JW … Ting DT (Nature communications 2020) 3
  4. MicroRNA profiling reveals important functions of miR-125b and let-7a during human retinal pigment epithelial cell differentiation. (PMID: 31758976) Shahriari F … Baharvand H (Experimental eye research 2020) 3
  5. Regulation of human trophoblast surrogate Jeg-3 spheroids implantation potential by Wnt/β-catenin pathway and lin28a/let-7a axis. (PMID: 31874176) Li Q … Liu W (Experimental cell research 2020) 3

ExternalLinks

View latest publications for MIRLET7A1 gene in Mastermind

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Sources for MIRLET7A1 Gene