Aliases for MIR924HG Gene

Subcategory (RNA class) for MIR924HG Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MIR924HG Gene

  • MIR924 Host Gene 2 3 5
  • MIR924HG 2 5 165
  • Long Intergenic Non-Protein Coding RNA 669 2 3
  • NONHSAG023729.2 91
  • HSALNG0121077 164
  • LINC00669 3

External Ids for MIR924HG Gene

Previous HGNC Symbols for MIR924HG Gene

  • LINC00669

Previous GeneCards Identifiers for MIR924HG Gene

  • GC18M039207

Summaries for MIR924HG Gene

GeneCards Summary for MIR924HG Gene

MIR924HG (MIR924 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MIR924HG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR924HG Gene

Genomics for MIR924HG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR924HG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J039798 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 607.5 +0.8 822 3 PRDM10 ZNF629 PRDM1 PATZ1 POLR2A ELF4 GABPA ZNF341 KMT2B ZXDB MIR924HG lnc-PIK3C3-11 lnc-CELF4-14
GH18J039783 Enhancer 0.6 Ensembl CraniofacialAtlas 7.9 +13.9 13921 6.4 PRDM4 PRDM6 NANOG MIR924HG lnc-PIK3C3-11 lnc-CELF4-14 ENSG00000286559
GH18J039701 Enhancer 0.9 Ensembl ENCODE 4.8 +98.5 98521 1.6 GATAD2A TFE3 RFX1 RXRB GABPA SOX13 RFX3 SP1 BMI1 FOXA2 RNU6-1242P MIR924HG piR-34822-146 lnc-PIK3C3-14 ENSG00000286559
GH18J039648 Enhancer 0.8 Ensembl ENCODE 4.3 +152.0 152021 1.4 ZNF629 PRDM1 ZBTB44 TARDBP ZSCAN18 ZFHX2 BHLHE40 ZBTB1 ZNF366 PRDM6 lnc-PIK3C3-15 RNU6-1242P MIR924HG LOC101927857 ENSG00000286559
GH18J039728 Enhancer 0.3 Ensembl 6.1 +71.6 71621 0.6 ESR1 MIR924HG lnc-PIK3C3-14 lnc-PIK3C3-13 ENSG00000286559
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR924HG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR924HG Gene

Genomic Locations for MIR924HG Gene
chr18:39,157,768-39,800,322
(GRCh38/hg38)
Size:
642,555 bases
Orientation:
Minus strand
chr18:36,786,888-37,380,282
(GRCh37/hg19)
Size:
593,395 bases
Orientation:
Minus strand

Genomic View for MIR924HG Gene

Genes around MIR924HG on UCSC Golden Path with GeneCards custom track
MIR924HG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR924HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR924HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR924HG Gene

Proteins for MIR924HG Gene

Post-translational modifications for MIR924HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR924HG Gene

Domains & Families for MIR924HG Gene

Gene Families for MIR924HG Gene

genes like me logo Genes that share domains with MIR924HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR924HG Gene

Function for MIR924HG Gene

Phenotypes From GWAS Catalog for MIR924HG Gene

Phenotypes for MIR924HG Gene

genes like me logo Genes that share phenotypes with MIR924HG: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR924HG Gene

Localization for MIR924HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR924HG Gene

Pathways & Interactions for MIR924HG Gene

PathCards logo

SuperPathways for MIR924HG Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR924HG Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR924HG Gene

Drugs & Compounds for MIR924HG Gene

No Compound Related Data Available

Transcripts for MIR924HG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR924HG Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D683_9606 lncRNA 2147 5

HGNC: 44332,

RefSeq: NR_024391,

LncBook: HSALNT0250228,

LNCipedia: MIR924HG:5,

NONCODE: NONHSAT059015.2,

URS0000014836_9606 lncRNA 1639 3

Ensembl: ENST00000591469 (view in UCSC) ,

LncBook: HSALNT0250230,

LNCipedia: MIR924HG:6,

URS0000EF539C_9606 lncRNA 2536 1

Ensembl: ENST00000663592 (view in UCSC) ,

URS0000EEEBA7_9606 lncRNA 2514 1

Ensembl: ENST00000669399 (view in UCSC) ,

URS0000EF1392_9606 lncRNA 2409 1

Ensembl: ENST00000668737 (view in UCSC) ,

MIR924HG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR924HG Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR924HG Gene

No ASD Table

Relevant External Links for MIR924HG Gene

GeneLoc Exon Structure for
MIR924HG

Expression for MIR924HG Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR924HG

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR924HG Gene

Orthologs for MIR924HG Gene

Evolution for MIR924HG Gene

ENSEMBL:
Gene Tree for MIR924HG (if available)
TreeFam:
Gene Tree for MIR924HG (if available)

No data available for Orthologs for MIR924HG Gene

Paralogs for MIR924HG Gene

No data available for Paralogs for MIR924HG Gene

Variants for MIR924HG Gene

Additional dbSNP identifiers (rs#s) for MIR924HG Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR924HG Gene

Variant ID Type Subtype PubMed ID
dgv3337n100 CNV loss 25217958
dgv3338n100 CNV loss 25217958
dgv60n6 CNV deletion 16902084
esv1027760 CNV insertion 17803354
esv1103359 CNV deletion 17803354
esv1512882 CNV deletion 17803354
esv1617092 CNV insertion 17803354
esv1686656 CNV deletion 17803354
esv1965311 CNV deletion 18987734
esv2018093 CNV deletion 18987734
esv2315224 CNV deletion 18987734
esv2643105 CNV deletion 19546169
esv2661112 CNV deletion 23128226
esv2664098 CNV deletion 23128226
esv2670254 CNV deletion 23128226
esv2677100 CNV deletion 23128226
esv2716982 CNV deletion 23290073
esv2716983 CNV deletion 23290073
esv2716985 CNV deletion 23290073
esv2716986 CNV deletion 23290073
esv2716987 CNV deletion 23290073
esv2716988 CNV deletion 23290073
esv2716989 CNV deletion 23290073
esv2716990 CNV deletion 23290073
esv2716991 CNV deletion 23290073
esv2716992 CNV deletion 23290073
esv2741405 CNV deletion 23290073
esv3129345 CNV deletion 24192839
esv3307150 CNV mobile element insertion 20981092
esv3446370 CNV insertion 20981092
esv3555257 CNV deletion 23714750
esv3555258 CNV deletion 23714750
esv3583023 CNV loss 25503493
esv3642276 CNV loss 21293372
esv3642277 CNV loss 21293372
esv3642278 CNV loss 21293372
esv3642279 CNV gain 21293372
esv3642280 CNV loss 21293372
esv3642282 CNV loss 21293372
esv3642283 CNV loss 21293372
esv3642285 CNV loss 21293372
esv3642286 CNV loss 21293372
esv3642287 CNV gain 21293372
esv3893089 CNV loss 25118596
esv4916 CNV loss 18987735
esv5226 CNV loss 18987735
esv6855 CNV loss 19470904
esv9054 CNV loss 19470904
esv990579 CNV deletion 20482838
esv991309 CNV deletion 20482838
esv993075 CNV deletion 20482838
nsv1056217 CNV loss 25217958
nsv1065853 CNV gain 25217958
nsv1072794 CNV deletion 25765185
nsv1113917 CNV deletion 24896259
nsv1113918 CNV deletion 24896259
nsv1116271 CNV deletion 24896259
nsv1127627 CNV deletion 24896259
nsv1129602 CNV tandem duplication 24896259
nsv1147134 CNV deletion 26484159
nsv131527 CNV deletion 16902084
nsv131786 CNV deletion 16902084
nsv132102 CNV insertion 16902084
nsv473541 CNV novel sequence insertion 20440878
nsv476216 CNV novel sequence insertion 20440878
nsv478971 CNV novel sequence insertion 20440878
nsv507868 OTHER sequence alteration 20534489
nsv510735 CNV deletion 20534489
nsv518021 CNV loss 19592680
nsv518471 CNV loss 19592680
nsv518996 CNV loss 19592680
nsv519944 CNV loss 19592680
nsv576670 CNV gain 21841781
nsv576671 CNV loss 21841781
nsv833624 CNV gain+loss 17160897
nsv833626 CNV loss 17160897
nsv833627 CNV gain 17160897
nsv962876 CNV duplication 23825009

Additional Variant Information for MIR924HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR924HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR924HG Gene

Disorders for MIR924HG Gene

No disorders were found for MIR924HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR924HG Gene

Publications for MIR924HG Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  5. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for MIR924HG Gene

Sources for MIR924HG Gene