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Aliases for MIR9-3HG Gene

Subcategory (RNA class) for MIR9-3HG Gene


Quality Score for this RNA gene is


Aliases for MIR9-3HG Gene

  • MIR9-3 Host Gene 2 3 5
  • Long Intergenic Non-Protein Coding RNA 925 2 3
  • CTD-2335A18.1 3
  • LINC00925 3

External Ids for MIR9-3HG Gene

Previous HGNC Symbols for MIR9-3HG Gene

  • LINC00925

Summaries for MIR9-3HG Gene

GeneCards Summary for MIR9-3HG Gene

MIR9-3HG (MIR9-3 Host Gene) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR9-3HG include Cervical Cancer. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins..

Additional gene information for MIR9-3HG Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR9-3HG Gene

Genomics for MIR9-3HG Gene

GeneHancer (GH) Regulatory Elements for MIR9-3HG Gene

Promoters and enhancers for MIR9-3HG Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J089361 Enhancer 1.1 ENCODE dbSUPER 650.7 +0.3 286 0.1 ARID4B SIN3A ZNF2 ZNF48 SLC30A9 ZNF766 ZNF143 FOS NFKBIZ MXD4 MIR9-3HG ARPIN RPL36AP43 ENSG00000173867 POLG NIFKP5 GC15P089367 GC15P089369
GH15J089430 Enhancer 1.1 Ensembl ENCODE 11.5 +69.2 69224 0.8 HDGF PKNOX1 ATF1 ARID4B SIN3A ZNF2 ZNF48 ARID2 ZNF143 ATF7 MIR9-3 MIR9-3HG POLG GC15M089390 GC15P089452 LOC105371031
GH15J089441 Enhancer 1 Ensembl ENCODE 11.7 +80.0 79999 0.8 HDGF NCOA3 KLF1 ESRRA NFIB NFXL1 ZIC2 IRF4 ZKSCAN1 HIC1 MIR9-3 MIR9-3HG GC15M089390 GC15P089452
GH15J089378 Enhancer 1.2 Ensembl ENCODE dbSUPER 8.9 +18.0 18019 2.6 PKNOX1 NFIB NEUROD1 MZF1 SIN3A RFX5 ELK1 E2F8 FOS RCOR1 GC15P089381 POLG MIR9-3HG GC15M089372
GH15J089411 Enhancer 0.8 ENCODE 12.8 +50.1 50066 0.2 CLOCK RB1 SIN3A RAD21 ELK1 ZNF143 ATF7 CREM SMARCA5 HCFC1 MIR9-3 MIR9-3HG POLG LOC105371031 GC15M089390
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR9-3HG on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR9-3HG Gene

Genomic Locations for MIR9-3HG Gene
36,909 bases
Plus strand
36,909 bases
Plus strand

Genomic View for MIR9-3HG Gene

Genes around MIR9-3HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR9-3HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR9-3HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR9-3HG Gene

Function for MIR9-3HG Gene

Phenotypes From GWAS Catalog for MIR9-3HG Gene

Phenotypes for MIR9-3HG Gene

genes like me logo Genes that share phenotypes with MIR9-3HG: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR9-3HG Gene

Localization for MIR9-3HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR9-3HG Gene

Pathways & Interactions for MIR9-3HG Gene

genes like me logo Genes that share pathways with MIR9-3HG: view

Pathways by source for MIR9-3HG Gene

1 BioSystems pathway for MIR9-3HG Gene

Interacting Proteins for MIR9-3HG Gene

Gene Ontology (GO) - Biological Process for MIR9-3HG Gene


No data available for SIGNOR curated interactions for MIR9-3HG Gene

Drugs & Compounds for MIR9-3HG Gene

No Compound Related Data Available

Transcripts for MIR9-3HG Gene

mRNA/cDNA for MIR9-3HG Gene

(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(15) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR9-3HG Gene

No ASD Table

Relevant External Links for MIR9-3HG Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR9-3HG Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR9-3HG Gene

Orthologs for MIR9-3HG Gene

Evolution for MIR9-3HG Gene

Gene Tree for MIR9-3HG (if available)
Gene Tree for MIR9-3HG (if available)

No data available for Orthologs for MIR9-3HG Gene

Paralogs for MIR9-3HG Gene

No data available for Paralogs for MIR9-3HG Gene

Variants for MIR9-3HG Gene

Sequence variations from dbSNP and Humsavar for MIR9-3HG Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000014242 -- 89,395,074(+) T/G non_coding_transcript_variant
rs1000180066 -- 89,371,803(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000290383 -- 89,378,141(+) A/G non_coding_transcript_variant
rs1000357946 -- 89,368,526(+) G/T genic_upstream_transcript_variant, intron_variant
rs1000382460 -- 89,366,103(+) T/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR9-3HG Gene

Variant ID Type Subtype PubMed ID
nsv1038140 CNV gain 25217958
nsv516532 CNV loss 19592680
nsv833086 CNV loss 17160897
nsv952024 CNV deletion 24416366

Additional Variant Information for MIR9-3HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR9-3HG Gene

Disorders for MIR9-3HG Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIR9-3HG Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
cervical cancer
  • cervical cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with MIR9-3HG: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR9-3HG Gene

Publications for MIR9-3HG Gene

  1. MicroRNA-9 promotes the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1. (PMID: 28397066) Liu DZ … Zou YH (Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico 2017) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MIR9-3HG Gene

Sources for MIR9-3HG Gene

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