MIR8058 Gene (RNA Gene)

MicroRNA 8058

GC16P082688
GIFtS:
8
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR8058 Gene

Data sources for MIR8058 Gene:

Subcategory (RNA class) for MIR8058 Gene

miRNA

Aliases for MIR8058 Gene

External Ids for MIR8058 Gene

Previous GeneCards Identifiers for MIR8058 Gene

  • GC16U901683

Summaries for MIR8058 Gene

Entrez Gene Summary for MIR8058 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR8058 Gene

MIR8058 (MicroRNA 8058) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR8058 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR8058 Gene

Genomics for MIR8058 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR8058 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J082698 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 +11.5 11470 4.4 CEBPB ZNF395 MAX VEZF1 EP300 FOXA2 STAT3 JUND TBP FOSL1 CDH13 MIR8058 ENSG00000280044 lnc-HSD17B2-6
GH16J082651 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.3 -34.3 -34273 6.9 SP1 BCL11A CEBPA POLR2A CEBPB FOXA2 IRF4 TRIM22 EP300 GABPA CDH13 5MWI_A-062 MIR8058
GH16J082693 Enhancer 0.6 Ensembl ENCODE 0.4 +5.6 5570 1.8 MAFK JUND ATF2 ATF7 MIR8058 lnc-HSD17B2-6 ENSG00000280044 CDH13
GH16J082659 Enhancer 0.7 FANTOM5 ENCODE dbSUPER 0.3 -28.0 -28022 2.5 RUNX3 CDH13 PLCG2 5MWI_A-062 MIR8058
GH16J082671 Enhancer 0.5 Ensembl dbSUPER 0.4 -16.8 -16830 0.2 CTCF SMC3 5MWI_A-062 MIR8058 CDH13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR8058 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR8058 Gene

Latest Assembly
chr16:82,688,931-82,689,019
(GRCh38/hg38)
Size:
89 bases
Orientation:
Plus strand

Previous Assembly
chr16:82,722,536-82,722,624
(GRCh37/hg19 by Entrez Gene)
Size:
89 bases
Orientation:
Plus strand

Genomic View for MIR8058 Gene

Genes around MIR8058 on UCSC Golden Path with GeneCards custom track
MIR8058 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR8058 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR8058 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR8058 Gene

Proteins for MIR8058 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for MIR8058 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR8058 Gene

Domains & Families for MIR8058 Gene

Gene Families for MIR8058 Gene

HGNC:
genes like me logo Genes that share domains with MIR8058: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR8058 Gene

Function for MIR8058 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR8058 Gene

Localization for MIR8058 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR8058 Gene

Pathways & Interactions for MIR8058 Gene

PathCards logo

SuperPathways for MIR8058 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR8058 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR8058 Gene

Drugs & Compounds for MIR8058 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for MIR8058 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR8058 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BACA_9606 pre_miRNA 89 3

RefSeq: NR_107025,

Ensembl: ENST00000615737 (view in UCSC) ,

miRBase: MI0025894,

URS000075E3DD_9606 miRNA 22 2

RefSeq: NR_107025,

miRBase: MIMAT0030985,

MIR8058 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR8058 Gene

No ASD Table

Relevant External Links for MIR8058 Gene

GeneLoc Exon Structure for
MIR8058

No data available for mRNA/cDNA for MIR8058 Gene

Expression for MIR8058 Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR8058 Gene

Orthologs for MIR8058 Gene

Evolution for MIR8058 Gene

ENSEMBL:
Gene Tree for MIR8058 (if available)
TreeFam:
Gene Tree for MIR8058 (if available)

No data available for Orthologs for MIR8058 Gene

Paralogs for MIR8058 Gene

No data available for Paralogs for MIR8058 Gene

Variants for MIR8058 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR8058 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR8058 Gene

Variant ID Type Subtype PubMed ID
dgv3051n100 CNV gain 25217958
dgv5253n54 CNV gain 21841781
esv2751616 CNV gain 17911159
esv3892916 CNV loss 25118596
esv3892917 CNV loss 25118596
nsv1059718 CNV loss 25217958
nsv1061288 CNV gain+loss 25217958
nsv1065896 CNV gain 25217958
nsv526366 CNV loss 19592680
nsv527828 CNV loss 19592680
nsv573367 CNV gain 21841781
nsv573371 CNV loss 21841781
nsv573379 CNV gain 21841781

Additional Variant Information for MIR8058 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR8058

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR8058 Gene

Disorders for MIR8058 Gene

Additional Disease Information for MIR8058

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR8058 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR8058 Gene

Publications for MIR8058 Gene

  1. Characterization and Identification of novel serum microRNAs in sepsis patients with different outcomes. (PMID: 23612084) Wang HJ … Xie LX (Shock (Augusta, Ga.) 2013) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

ExternalLinks

View latest publications for MIR8058 gene in Mastermind

Products for MIR8058 Gene

Sources for MIR8058 Gene