MIR7852 Gene (RNA Gene)

MicroRNA 7852

GC01P107897
GIFtS:
8
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR7852 Gene

Data sources for MIR7852 Gene:

Subcategory (RNA class) for MIR7852 Gene

miRNA

Aliases for MIR7852 Gene

External Ids for MIR7852 Gene

Previous GeneCards Identifiers for MIR7852 Gene

  • GC01U904164

Summaries for MIR7852 Gene

Entrez Gene Summary for MIR7852 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR7852 Gene

MIR7852 (MicroRNA 7852) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR7852 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR7852 Gene

Genomics for MIR7852 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR7852 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J107894 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 250.7 +0.4 353 6.5 FEZF1 EBF1 ZNF843 PRDM6 SPI1 POLR2A MCM2 IKZF1 L3MBTL2 CEBPB MIR7852 VAV3 PRPF38B VAV3-AS1 SLC25A24 HG984097 TRUND-NNN8-1 NTNG1
GH01J107934 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.3 +38.9 38945 3.7 BCL11A SP1 FEZF1 ZNF217 ELF1 CEBPB SIN3A MBD2 CUX1 ZNF639 VAV3 VAV3-AS1 HG984097 TRUND-NNN8-1 MIR7852 NTNG1
GH01J107873 Enhancer 0.8 dbSUPER 0.3 -21.5 -21466 5 BCL11A FEZF1 ZEB1 CEBPB ZNF639 EBF1 ZNF843 BCL11B PRDM6 SPI1 PRPF38B VAV3 VAV3-AS1 lnc-NTNG1-3 MIR7852 NTNG1
GH01J107912 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +16.7 16678 4.6 CEBPB RFX5 ATF4 SP7 VAV3 VAV3-AS1 MIR7852 TRUND-NNN8-1 HG984097 NTNG1
GH01J107890 Enhancer 0.6 Ensembl dbSUPER 0.4 -6.4 -6422 1.2 NFE2 MAFK MAFF HSF1 VAV3 VAV3-AS1 MIR7852 lnc-NTNG1-3 NTNG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR7852 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR7852 Gene

Latest Assembly
chr1:107,897,223-107,897,304
(GRCh38/hg38)
Size:
82 bases
Orientation:
Plus strand

Previous Assembly
chr1:108,439,845-108,439,926
(GRCh37/hg19 by Entrez Gene)
Size:
82 bases
Orientation:
Plus strand

Genomic View for MIR7852 Gene

Genes around MIR7852 on UCSC Golden Path with GeneCards custom track
MIR7852 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR7852 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR7852 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR7852 Gene

Proteins for MIR7852 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for MIR7852 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR7852 Gene

Domains & Families for MIR7852 Gene

Gene Families for MIR7852 Gene

HGNC:
genes like me logo Genes that share domains with MIR7852: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR7852 Gene

Function for MIR7852 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR7852 Gene

Localization for MIR7852 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR7852 Gene

Pathways & Interactions for MIR7852 Gene

PathCards logo

SuperPathways for MIR7852 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR7852 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR7852 Gene

Drugs & Compounds for MIR7852 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for MIR7852 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR7852 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B70F_9606 pre_miRNA 82 3

RefSeq: NR_107006,

Ensembl: ENST00000617442 (view in UCSC) ,

miRBase: MI0025522,

URS000075B643_9606 miRNA 22 2

RefSeq: NR_107006,

miRBase: MIMAT0030427,

MIR7852 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR7852 Gene

No ASD Table

Relevant External Links for MIR7852 Gene

GeneLoc Exon Structure for
MIR7852

No data available for mRNA/cDNA for MIR7852 Gene

Expression for MIR7852 Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR7852 Gene

Orthologs for MIR7852 Gene

Evolution for MIR7852 Gene

ENSEMBL:
Gene Tree for MIR7852 (if available)
TreeFam:
Gene Tree for MIR7852 (if available)

No data available for Orthologs for MIR7852 Gene

Paralogs for MIR7852 Gene

No data available for Paralogs for MIR7852 Gene

Variants for MIR7852 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR7852 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR7852 Gene

Variant ID Type Subtype PubMed ID
dgv248n100 CNV gain 25217958
dgv469n54 CNV gain 21841781
nsv1011093 CNV gain 25217958
nsv524680 CNV gain 19592680
nsv831015 CNV gain 17160897
nsv950534 CNV duplication 24416366

Additional Variant Information for MIR7852 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR7852

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR7852 Gene

Disorders for MIR7852 Gene

Additional Disease Information for MIR7852

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR7852 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR7852 Gene

Publications for MIR7852 Gene

  1. The repertoire and features of human platelet microRNAs. (PMID: 23226537) Plé H … Provost P (PloS one 2012) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

No data available for Mastermind for MIR7852 Gene

Products for MIR7852 Gene

Sources for MIR7852 Gene