microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR6878 Gene

Subcategory (RNA class) for MIR6878 Gene

miRNA

Number of RNA Genes sources:

1 / 14

Aliases for MIR6878 Gene

  • MicroRNA 6878 2 3 5
  • MicroRNA Mir-6878 3
  • Hsa-Mir-6878 3
  • MIMAT0027657 51
  • MIMAT0027656 51
  • MI0022725 51
  • MIR6878 2

External Ids for MIR6878 Gene

Previous GeneCards Identifiers for MIR6878 Gene

  • GC01U904009

Summaries for MIR6878 Gene

Entrez Gene Summary for MIR6878 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6878 Gene

MIR6878 (MicroRNA 6878) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are tRNA Aminoacylation and Gene Expression.

Additional gene information for MIR6878 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR6878 Gene

Genomics for MIR6878 Gene

GeneHancer (GH) Regulatory Elements for MIR6878 Gene

Promoters and enhancers for MIR6878 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J150486 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -4.7 -4744 2 FOXK2 ZBTB40 ZNF217 CTCF SIN3A TCF12 POLR2G SP1 NCOR1 RBAK TARS2 HSALNG0007040 RF00017-331 SETDB1 PRPF3 GABPB2 PI4KB ZNF687 PIP5K1A SF3B4
GH01J150506 Enhancer 1 Ensembl ENCODE 0.4 +14.5 14546 0.6 NRF1 ZIC2 HES1 CTBP1 HDAC3 NR2F2 NCOR1 ARNT MYNN TRIM28 ECM1 NONHSAG002852.2 C1orf56 PIP5K1A MIR6878 TARS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6878 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR6878 Gene

Genomic Locations for MIR6878 Gene
chr1:150,492,345-150,492,410
(GRCh38/hg38)
Size:
66 bases
Orientation:
Plus strand

Genomic View for MIR6878 Gene

Genes around MIR6878 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR6878 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6878 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6878 Gene

Proteins for MIR6878 Gene

Post-translational modifications for MIR6878 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6878 Gene

Domains & Families for MIR6878 Gene

Gene Families for MIR6878 Gene

HGNC:
genes like me logo Genes that share domains with MIR6878: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR6878 Gene

Function for MIR6878 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6878 Gene

Localization for MIR6878 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6878 Gene

Pathways & Interactions for MIR6878 Gene

PathCards logo

SuperPathways for MIR6878 Gene

genes like me logo Genes that share pathways with MIR6878: view

Pathways by source for MIR6878 Gene

;

Gene Ontology (GO) - Biological Process for MIR6878 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for MIR6878 Gene

Drugs & Compounds for MIR6878 Gene

No Compound Related Data Available

Transcripts for MIR6878 Gene

mRNA/cDNA for MIR6878 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 miRBase transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6878 Gene

No ASD Table

Relevant External Links for MIR6878 Gene

GeneLoc Exon Structure for
MIR6878

Expression for MIR6878 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6878 Gene

Orthologs for MIR6878 Gene

Evolution for MIR6878 Gene

ENSEMBL:
Gene Tree for MIR6878 (if available)
TreeFam:
Gene Tree for MIR6878 (if available)

No data available for Orthologs for MIR6878 Gene

Paralogs for MIR6878 Gene

No data available for Paralogs for MIR6878 Gene

Variants for MIR6878 Gene

Additional dbSNP identifiers (rs#s) for MIR6878 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR6878 Gene

Variant ID Type Subtype PubMed ID
nsv1006838 CNV gain 25217958

Additional Variant Information for MIR6878 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6878

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR6878 Gene

Disorders for MIR6878 Gene

Additional Disease Information for MIR6878

No disorders were found for MIR6878 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6878 Gene

Publications for MIR6878 Gene

  1. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3 54
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 54

Products for MIR6878 Gene

Sources for MIR6878 Gene