microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR6809 Gene

Data sources for MIR6809 Gene:

RNA type for MIR6809 Gene

miRNA

Aliases for MIR6809 Gene

External Ids for MIR6809 Gene

Previous GeneCards Identifiers for MIR6809 Gene

  • GC02U902953

Summaries for MIR6809 Gene

Entrez Gene Summary for MIR6809 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6809 Gene

MIR6809 (MicroRNA 6809) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR6809 Gene

Genomics for MIR6809 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR6809 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J217897 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -6.0 -5951 18 ZNF600 SSRP1 JUND ZMYM3 KLF9 CEBPA ATF3 ZIC2 CHD4 YY1 TNS1 CNOT9 AAMP ZNF142 SLC11A1 STK36 TNS1-AS1 USP37 RUFY4 RNF25
GH02J217926 Promoter/Enhancer 2.5 VISTA EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -34.9 -34931 18.3 JUND ZMYM3 ATF3 POLR2A ZIC2 CHD4 YY1 HOMEZ CTCF ZNF217 TNS1 SLC11A1 TNS1-AS1 PNKD CXCR2 ARPC2 TMBIM1 HSALNG0022217 MIR6809
GH02J217918 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -21.1 -21112 7.3 JUND ZIC2 CHD4 ZNF341 CTCF MAFF RXRA SAP130 YY1 GABPB1 TNS1-AS1 TNS1 RUFY4 HSALNG0022217 MIR6809
GH02J217914 Promoter/Enhancer 1 Ensembl dbSUPER 0.4 -15.7 -15673 0.6 CEBPA ATF3 YY1 FOXA2 RXRA ZBTB33 JUND HNF4A FOXA1 RAD21 TNS1-AS1 TNS1 RUFY4 MIR6809 HSALNG0022217
GH02J217917 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.4 -17.1 -17073 0.6 MAFF ZNF316 MAFK TNS1-AS1 TNS1 RUFY4 MIR6809 HSALNG0022217
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6809 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR6809 Gene

Latest Assembly
chr2:217,900,513-217,900,628
(GRCh38/hg38)
Size:
116 bases
Orientation:
Minus strand

Previous Assembly
chr2:218,765,236-218,765,351
(GRCh37/hg19 by Entrez Gene)
Size:
116 bases
Orientation:
Minus strand

Genomic View for MIR6809 Gene

Genes around MIR6809 on UCSC Golden Path with GeneCards custom track
MIR6809 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR6809 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6809 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6809 Gene

Proteins for MIR6809 Gene

Post-translational modifications for MIR6809 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6809 Gene

Domains & Families for MIR6809 Gene

Gene Families for MIR6809 Gene

HGNC:
genes like me logo Genes that share domains with MIR6809: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR6809 Gene

Function for MIR6809 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6809 Gene

Localization for MIR6809 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6809 Gene

Pathways & Interactions for MIR6809 Gene

PathCards logo

SuperPathways for MIR6809 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR6809 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR6809 Gene

Drugs & Compounds for MIR6809 Gene

No Compound Related Data Available

Transcripts for MIR6809 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR6809 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075C238_9606 precursor_RNA 116 3

RefSeq: NR_106867,

Ensembl: ENST00000612189 (view in UCSC) ,

miRBase: MI0022654,

URS0000759948_9606 miRNA 22 2

RefSeq: NR_106867,

miRBase: MIMAT0027518,

URS000075CC57_9606 miRNA 21 2

RefSeq: NR_106867,

miRBase: MIMAT0027519,

MIR6809 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6809 Gene

No ASD Table

Relevant External Links for MIR6809 Gene

GeneLoc Exon Structure for
MIR6809

No data available for mRNA/cDNA for MIR6809 Gene

Expression for MIR6809 Gene

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6809 Gene

Orthologs for MIR6809 Gene

Evolution for MIR6809 Gene

ENSEMBL:
Gene Tree for MIR6809 (if available)
TreeFam:
Gene Tree for MIR6809 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR6809

No data available for Orthologs for MIR6809 Gene

Paralogs for MIR6809 Gene

No data available for Paralogs for MIR6809 Gene

Variants for MIR6809 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR6809 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR6809 Gene

Variant ID Type Subtype PubMed ID
nsv834541 CNV loss 17160897

Additional Variant Information for MIR6809 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6809
Leiden Open Variation Database (LOVD)
MIR6809

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR6809 Gene

Disorders for MIR6809 Gene

Additional Disease Information for MIR6809

No disorders were found for MIR6809 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6809 Gene

Publications for MIR6809 Gene

  1. MicroRNA-6809-5p mediates luteolin-induced anticancer effects against hepatoma by targeting flotillin 1. (PMID: 30668319) Yang PW … Zhang SH (Phytomedicine : international journal of phytotherapy and phytopharmacology 2019) 3
  2. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR6809 Gene

Sources for MIR6809 Gene