MIR6808 Gene (RNA Gene)

MicroRNA 6808

GC01M001339
GIFtS:
9
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR6808 Gene

Data sources for MIR6808 Gene:

Subcategory (RNA class) for MIR6808 Gene

miRNA

Aliases for MIR6808 Gene

External Ids for MIR6808 Gene

Previous GeneCards Identifiers for MIR6808 Gene

  • GC01U904037

Summaries for MIR6808 Gene

Entrez Gene Summary for MIR6808 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6808 Gene

MIR6808 (MicroRNA 6808) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Association Between Physico-Chemical Features and Toxicity Associated Pathways and Signaling by GPCR.

Additional gene information for MIR6808 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR6808 Gene

Genomics for MIR6808 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR6808 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J001337 Enhancer 0.5 dbSUPER 250.7 +1.9 1906 0.9 SMAD5 SP1 GLIS1 KLF1 SP3 KLF8 RBFOX2 MIR6808 ANKRD65 TAS1R3 DVL1
GH01J001330 Enhancer 1 Ensembl ENCODE 0.4 +7.9 7907 4.8 DEK POLR2A ZIC2 CEBPB MAX ZNF341 GABPB1 SMC3 MYNN TARDBP TAS1R3 HSALNG0000136 ANKRD65 ATAD3B INTS11 SLC35E2A LINC01409 LINC00115 ENSG00000240731 ENSG00000227775
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6808 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR6808 Gene

Latest Assembly
chr1:1,339,650-1,339,708
(GRCh38/hg38)
Size:
59 bases
Orientation:
Minus strand

Previous Assembly
chr1:1,275,030-1,275,088
(GRCh37/hg19 by Entrez Gene)
Size:
59 bases
Orientation:
Minus strand

Genomic View for MIR6808 Gene

Genes around MIR6808 on UCSC Golden Path with GeneCards custom track
MIR6808 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR6808 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6808 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR6808 Gene

Proteins for MIR6808 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for MIR6808 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6808 Gene

Domains & Families for MIR6808 Gene

Gene Families for MIR6808 Gene

HGNC:
genes like me logo Genes that share domains with MIR6808: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR6808 Gene

Function for MIR6808 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6808 Gene

Localization for MIR6808 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6808 Gene

Pathways & Interactions for MIR6808 Gene

genes like me logo Genes that share pathways with MIR6808: view

Gene Ontology (GO) - Biological Process for MIR6808 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for MIR6808 Gene

Drugs & Compounds for MIR6808 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for MIR6808 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR6808 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075F035_9606 pre_miRNA 59 3

RefSeq: NR_106866,

Ensembl: ENST00000616525 (view in UCSC) ,

miRBase: MI0022653,

URS000075A409_9606 miRNA 22 2

RefSeq: NR_106866,

miRBase: MIMAT0027516,

URS0000759DC1_9606 miRNA 21 2

RefSeq: NR_106866,

miRBase: MIMAT0027517,

MIR6808 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6808 Gene

No ASD Table

Relevant External Links for MIR6808 Gene

GeneLoc Exon Structure for
MIR6808

No data available for mRNA/cDNA for MIR6808 Gene

Expression for MIR6808 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6808 Gene

Orthologs for MIR6808 Gene

Evolution for MIR6808 Gene

ENSEMBL:
Gene Tree for MIR6808 (if available)
TreeFam:
Gene Tree for MIR6808 (if available)

No data available for Orthologs for MIR6808 Gene

Paralogs for MIR6808 Gene

No data available for Paralogs for MIR6808 Gene

Variants for MIR6808 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR6808 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR6808 Gene

Variant ID Type Subtype PubMed ID
dgv26n54 CNV loss 21841781
dgv27n54 CNV gain 21841781
dgv2n67 CNV gain 20364138
dgv6n100 CNV gain+loss 25217958
dgv7n100 CNV loss 25217958
esv2758912 CNV loss 17122850
esv3890636 CNV loss 25118596
nsv1000169 CNV gain 25217958
nsv1009541 CNV gain 25217958
nsv10161 CNV gain+loss 18304495
nsv1160788 CNV deletion 26073780
nsv470680 CNV loss 18288195
nsv482937 CNV loss 15286789
nsv544969 CNV loss 21841781
nsv544971 CNV loss 21841781
nsv544977 CNV gain+loss 21841781
nsv950452 CNV deletion 24416366
nsv997291 CNV gain 25217958

Additional Variant Information for MIR6808 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6808

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR6808 Gene

Disorders for MIR6808 Gene

Additional Disease Information for MIR6808

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR6808 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6808 Gene

Publications for MIR6808 Gene

  1. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

ExternalLinks

View latest publications for MIR6808 gene in Mastermind

Products for MIR6808 Gene

Sources for MIR6808 Gene