microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR6805 Gene

Data sources for MIR6805 Gene:

RNA type for MIR6805 Gene

miRNA

Aliases for MIR6805 Gene

External Ids for MIR6805 Gene

Previous GeneCards Identifiers for MIR6805 Gene

  • GC19U901806
  • GC19P055391
  • GC19P055499
  • GC19P055680

Summaries for MIR6805 Gene

Entrez Gene Summary for MIR6805 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6805 Gene

MIR6805 (MicroRNA 6805) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Viral mRNA Translation and rRNA processing in the nucleus and cytosol.

Additional gene information for MIR6805 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR6805 Gene

Genomics for MIR6805 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR6805 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J055382 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.5 -1503 8.6 SP1 ZNF207 MYC ZNF600 SSRP1 ZNF580 ZNF592 POLR2A BRCA1 ZIC2 RPL28 HSALNG0127651 HSALNG0127652 TMEM238 MIR6805 piR-50436 IL11 ZNF628 FIZ1 ZNF542P
GH19J055392 Enhancer 0.9 Ensembl ENCODE 0.7 +4.2 4156 2.5 ZNF600 ZNF580 POLR2A NFIC DEK BCL11B ZNF143 ZBTB33 ATF4 GLIS1 LENG8 U2AF2 LENG8-AS1 ENSG00000235681 ENSG00000267523 KMT5C ZNF580 ENSG00000267838 BRSK1 ENSG00000279794
GH19J055397 Enhancer 0.5 FANTOM5 0.4 +10.2 10156 0.1 IRF4 NFE2 BATF JUNB ZFP36 ZNF143 BRSK1 TMEM86B TMEM150B PPP1R12C lnc-UBE2S-1 UBE2S MIR6805 RPL28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6805 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR6805 Gene

Latest Assembly
chr19:55,388,181-55,388,242
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand

Previous Assembly
chr19:55,899,549-55,899,610
(GRCh37/hg19 by Entrez Gene)
Size:
62 bases
Orientation:
Plus strand

Genomic View for MIR6805 Gene

Genes around MIR6805 on UCSC Golden Path with GeneCards custom track
MIR6805 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR6805 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6805 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6805 Gene

Proteins for MIR6805 Gene

Post-translational modifications for MIR6805 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6805 Gene

Domains & Families for MIR6805 Gene

Gene Families for MIR6805 Gene

HGNC:
genes like me logo Genes that share domains with MIR6805: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR6805 Gene

Function for MIR6805 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6805 Gene

Localization for MIR6805 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6805 Gene

Pathways & Interactions for MIR6805 Gene

genes like me logo Genes that share pathways with MIR6805: view

Pathways by source for MIR6805 Gene

Gene Ontology (GO) - Biological Process for MIR6805 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for MIR6805 Gene

Drugs & Compounds for MIR6805 Gene

No Compound Related Data Available

Transcripts for MIR6805 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR6805 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075BE40_9606 precursor_RNA 62 3

RefSeq: NR_106863,

Ensembl: ENST00000615055 (view in UCSC) ,

miRBase: MI0022650,

URS000075D13A_9606 miRNA 23 2

RefSeq: NR_106863,

miRBase: MIMAT0027511,

URS000075CC09_9606 miRNA 22 2

RefSeq: NR_106863,

miRBase: MIMAT0027510,

MIR6805 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6805 Gene

No ASD Table

Relevant External Links for MIR6805 Gene

GeneLoc Exon Structure for
MIR6805

No data available for mRNA/cDNA for MIR6805 Gene

Expression for MIR6805 Gene

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6805 Gene

Orthologs for MIR6805 Gene

Evolution for MIR6805 Gene

ENSEMBL:
Gene Tree for MIR6805 (if available)
TreeFam:
Gene Tree for MIR6805 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR6805

No data available for Orthologs for MIR6805 Gene

Paralogs for MIR6805 Gene

No data available for Paralogs for MIR6805 Gene

Variants for MIR6805 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR6805 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR6805 Gene

Variant ID Type Subtype PubMed ID
nsv470162 CNV loss 18288195
nsv516199 CNV loss 19592680
nsv953624 CNV deletion 24416366

Additional Variant Information for MIR6805 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6805
Leiden Open Variation Database (LOVD)
MIR6805

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR6805 Gene

Disorders for MIR6805 Gene

Additional Disease Information for MIR6805

No disorders were found for MIR6805 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6805 Gene

Publications for MIR6805 Gene

  1. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR6805 Gene

Sources for MIR6805 Gene