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Aliases for MIR6797 Gene

Subcategory (RNA class) for MIR6797 Gene

miRNA

Quality Score for this RNA gene is

13

Aliases for MIR6797 Gene

  • MicroRNA 6797 2 3 5
  • MicroRNA Mir-6797 3
  • Hsa-Mir-6797 3

External Ids for MIR6797 Gene

Previous GeneCards Identifiers for MIR6797 Gene

  • GC19U901856

Summaries for MIR6797 Gene

Entrez Gene Summary for MIR6797 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6797 Gene

MIR6797 (MicroRNA 6797) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR6797 include Diamond-Blackfan Anemia 1 and Diamond-Blackfan Anemia.

Additional gene information for MIR6797 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR6797 Gene

Genomics for MIR6797 Gene

GeneHancer (GH) Regulatory Elements for MIR6797 Gene

Promoters and enhancers for MIR6797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041867 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.2 4205 12.5 SP1 ZFX CC2D1A CTCF ZNF148 POLR2A ZNF121 ZNF384 ZNF687 NFIB CD79A ARHGEF1 ZNF526 HNRNPUL1 CCDC97 RABAC1 ZNF574 POU2F2 DEDD2 CEACAM4
GH19J041859 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 -7.7 -7655 5.9 MTA3 SP1 CC2D1A ZFX MNT SIX5 ZNF148 NKRF MLLT1 ZNF121 RPS19 PIR51753 ZNF526 HNRNPUL1 ZNF574 CCDC97 CIC RABAC1 ARHGEF1 MIR6797
GH19J041866 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -3.2 -3216 0.4 GLIS2 PRDM10 POLR2A SUPT5H HIC1 SMAD5 GLIS1 MIR6797 RPS19 PIR51753
GH19J041868 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -2.5 -2527 0.6 GLIS2 ZNF600 POLR2A ZFP69B SUPT5H MIR6797 RPS19 PIR51753
GH19J041864 Enhancer 0.3 ENCODE 0.7 -4.6 -4581 0.2 POLR2A MIR6797 PIR51753 RPS19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6797 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR6797 Gene

Genomic Locations for MIR6797 Gene
chr19:41,869,627-41,869,698
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand

Genomic View for MIR6797 Gene

Genes around MIR6797 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR6797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6797 Gene

Proteins for MIR6797 Gene

Post-translational modifications for MIR6797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6797 Gene

Domains & Families for MIR6797 Gene

Gene Families for MIR6797 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR6797: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR6797 Gene

Function for MIR6797 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6797 Gene

Localization for MIR6797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6797 Gene

Pathways & Interactions for MIR6797 Gene

PathCards logo

SuperPathways for MIR6797 Gene

No Data Available

Interacting Proteins for MIR6797 Gene

Gene Ontology (GO) - Biological Process for MIR6797 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR6797 Gene

Drugs & Compounds for MIR6797 Gene

No Compound Related Data Available

Transcripts for MIR6797 Gene

mRNA/cDNA for MIR6797 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6797 Gene

No ASD Table

Relevant External Links for MIR6797 Gene

GeneLoc Exon Structure for
MIR6797
ECgene alternative splicing isoforms for
MIR6797

Expression for MIR6797 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR6797 Gene:

MIR6797
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6797 Gene

Orthologs for MIR6797 Gene

Evolution for MIR6797 Gene

ENSEMBL:
Gene Tree for MIR6797 (if available)
TreeFam:
Gene Tree for MIR6797 (if available)

No data available for Orthologs for MIR6797 Gene

Paralogs for MIR6797 Gene

No data available for Paralogs for MIR6797 Gene

Variants for MIR6797 Gene

Sequence variations from dbSNP and Humsavar for MIR6797 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs104894711 pathogenic, Diamond-Blackfan anemia 1, not provided 41,869,042(+) C/T upstream_transcript_variant
rs1060503688 likely-pathogenic, Diamond-Blackfan anemia 41,869,724(+) C/T downstream_transcript_variant
rs121908649 pathogenic, Diamond-Blackfan anemia 1 41,869,108(+) A/T upstream_transcript_variant
rs1366610 benign, Diamond-Blackfan anemia, not specified 41,869,228(+) A/C/G/T upstream_transcript_variant
rs1555841301 pathogenic, Diamond-Blackfan anemia 41,869,043(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR6797 Gene

Variant ID Type Subtype PubMed ID
nsv520239 CNV loss 19592680
nsv522854 CNV gain 19592680

Additional Variant Information for MIR6797 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6797

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR6797 Gene

Disorders for MIR6797 Gene

MalaCards: The human disease database

(2) MalaCards diseases for MIR6797 Gene - From: GeneCards

Disorder Aliases PubMed IDs
diamond-blackfan anemia 1
  • dba1
diamond-blackfan anemia
  • diamond-blackfan anemia 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR6797

genes like me logo Genes that share disorders with MIR6797: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR6797 Gene

Publications for MIR6797 Gene

  1. Parathyroid hormone-stimulation of Runx2 during osteoblast differentiation via the regulation of lnc-SUPT3H-1:16 (RUNX2-AS1:32) and miR-6797-5p. (PMID: 30562548) Arumugam B … Selvamurugan N (Biochimie 2019) 3 58
  2. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR6797 Gene

Sources for MIR6797 Gene

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