microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR6787 Gene

Data sources for MIR6787 Gene:

RNA type for MIR6787 Gene

miRNA

Aliases for MIR6787 Gene

External Ids for MIR6787 Gene

Previous GeneCards Identifiers for MIR6787 Gene

  • GC17U902055

Summaries for MIR6787 Gene

Entrez Gene Summary for MIR6787 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6787 Gene

MIR6787 (MicroRNA 6787) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds and Cell surface interactions at the vascular wall.

Additional gene information for MIR6787 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR6787 Gene

Genomics for MIR6787 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR6787 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J082234 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.7 +2.6 2588 10.2 ZNF654 MYC ZNF600 IKZF1 SSRP1 ZNF592 KLF9 POLR2A CEBPA ZNF10 lnc-CCDC57-5 FAAP100 TBCD HEXD ENSG00000265678 NARF-IT1 RFNG HGS DUS1L ENSG00000260563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6787 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR6787 Gene

Latest Assembly
chr17:82,236,668-82,236,728
(GRCh38/hg38)
Size:
61 bases
Orientation:
Plus strand

Previous Assembly
chr17:80,194,544-80,194,604
(GRCh37/hg19 by Entrez Gene)
Size:
61 bases
Orientation:
Plus strand

Genomic View for MIR6787 Gene

Genes around MIR6787 on UCSC Golden Path with GeneCards custom track
MIR6787 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR6787 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6787 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6787 Gene

Proteins for MIR6787 Gene

Post-translational modifications for MIR6787 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6787 Gene

Domains & Families for MIR6787 Gene

Gene Families for MIR6787 Gene

HGNC:
genes like me logo Genes that share domains with MIR6787: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR6787 Gene

Function for MIR6787 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6787 Gene

Localization for MIR6787 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6787 Gene

Pathways & Interactions for MIR6787 Gene

genes like me logo Genes that share pathways with MIR6787: view

Gene Ontology (GO) - Biological Process for MIR6787 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for MIR6787 Gene

Drugs & Compounds for MIR6787 Gene

No Compound Related Data Available

Transcripts for MIR6787 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR6787 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075F0F2_9606 pre_miRNA 61 3

RefSeq: NR_106845,

Ensembl: ENST00000616675 (view in UCSC) ,

miRBase: MI0022632,

URS000075CC55_9606 miRNA 22 2

RefSeq: NR_106845,

miRBase: MIMAT0027475,

URS000075DD35_9606 miRNA 22 2

RefSeq: NR_106845,

miRBase: MIMAT0027474,

MIR6787 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6787 Gene

No ASD Table

Relevant External Links for MIR6787 Gene

GeneLoc Exon Structure for
MIR6787

No data available for mRNA/cDNA for MIR6787 Gene

Expression for MIR6787 Gene

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6787 Gene

Orthologs for MIR6787 Gene

Evolution for MIR6787 Gene

ENSEMBL:
Gene Tree for MIR6787 (if available)
TreeFam:
Gene Tree for MIR6787 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR6787

No data available for Orthologs for MIR6787 Gene

Paralogs for MIR6787 Gene

No data available for Paralogs for MIR6787 Gene

Variants for MIR6787 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR6787 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR6787 Gene

Variant ID Type Subtype PubMed ID
esv21913 CNV gain+loss 19812545
esv995451 CNV deletion 20482838
nsv2166 CNV insertion 18451855
nsv428351 CNV gain 18775914
nsv576193 CNV loss 21841781
nsv833572 CNV loss 17160897

Additional Variant Information for MIR6787 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6787
Leiden Open Variation Database (LOVD)
MIR6787

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR6787 Gene

Disorders for MIR6787 Gene

Additional Disease Information for MIR6787

No disorders were found for MIR6787 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6787 Gene

Publications for MIR6787 Gene

  1. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR6787 Gene

Sources for MIR6787 Gene