MIR6779 Gene (RNA Gene)

MicroRNA 6779

GC17P038914
GIFtS:
8
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR6779 Gene

Subcategory (RNA class) for MIR6779 Gene

miRNA

Number of RNA Genes sources:

1 / 17

Aliases for MIR6779 Gene

  • MicroRNA 6779 2 3 5
  • Hsa-Mir-6779 2 3
  • MIR6779 2 5
  • MicroRNA Mir-6779 3
  • MIMAT0027459 50
  • MIMAT0027458 50
  • MI0022624 50

External Ids for MIR6779 Gene

Previous GeneCards Identifiers for MIR6779 Gene

  • GC17U902049

Summaries for MIR6779 Gene

Entrez Gene Summary for MIR6779 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6779 Gene

MIR6779 (MicroRNA 6779) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR6779 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR6779 Gene

Genomics for MIR6779 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR6779 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J038913 Enhancer 1 ENCODE dbSUPER 600.7 +0.0 9 2.3 HNRNPL GATAD2A CTCF ZBTB33 TFE3 NFKBIZ RCOR2 RXRB IRF2 SP1 MIR6779 lnc-LINC00672-1 ENSG00000266588 LINC00672 STARD3 ENSG00000265784 LASP1 FBXO47
GH17J038910 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -2.7 -2664 2.2 SP1 ZBTB33 NR2F2 RCOR1 RAD21 HNF4A RXRA MAX CHD2 HNF4G PLXDC1 LINC00672 MIR6779 ENSG00000263466 LASP1 FBXO47
GH17J038908 Enhancer 0.6 ENCODE dbSUPER 0.4 -6.2 -6156 0.2 ZIC2 RELA TCF12 MAX ENSG00000263466 MIR6779 LASP1 FBXO47
GH17J038906 Enhancer 0.4 ENCODE dbSUPER 0.4 -8.0 -7994 0.3 SPI1 ENSG00000263466 MIR6779 LASP1 FBXO47
GH17J038907 Enhancer 0.2 dbSUPER 0.4 -6.8 -6827 0.5 ENSG00000263466 MIR6779 LASP1 FBXO47
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6779 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR6779 Gene

Genomic Locations for MIR6779 Gene
chr17:38,914,979-38,915,042
(GRCh38/hg38)
Size:
64 bases
Orientation:
Plus strand

Genomic View for MIR6779 Gene

Genes around MIR6779 on UCSC Golden Path with GeneCards custom track
MIR6779 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR6779 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6779 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR6779 Gene

Proteins for MIR6779 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR6779 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6779 Gene

Domains & Families for MIR6779 Gene

Gene Families for MIR6779 Gene

HGNC:
genes like me logo Genes that share domains with MIR6779: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR6779 Gene

Function for MIR6779 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6779 Gene

Localization for MIR6779 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6779 Gene

Pathways & Interactions for MIR6779 Gene

PathCards logo

SuperPathways for MIR6779 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR6779 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR6779 Gene

Drugs & Compounds for MIR6779 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR6779 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR6779 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D7CB_9606 precursor_RNA 64 4

HGNC: 50148,

RefSeq: NR_106837,

Ensembl: ENST00000617283 (view in UCSC) ,

miRBase: MI0022624,

URS000075A236_9606 miRNA 21 2

RefSeq: NR_106837,

miRBase: MIMAT0027458,

URS000075B933_9606 miRNA 21 2

RefSeq: NR_106837,

miRBase: MIMAT0027459,

MIR6779 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6779 Gene

No ASD Table

Relevant External Links for MIR6779 Gene

GeneLoc Exon Structure for
MIR6779

No data available for mRNA/cDNA for MIR6779 Gene

Expression for MIR6779 Gene

Products:

  1. Primer
  2. Gene Expression Assay
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6779 Gene

Orthologs for MIR6779 Gene

Evolution for MIR6779 Gene

ENSEMBL:
Gene Tree for MIR6779 (if available)
TreeFam:
Gene Tree for MIR6779 (if available)

No data available for Orthologs for MIR6779 Gene

Paralogs for MIR6779 Gene

No data available for Paralogs for MIR6779 Gene

Variants for MIR6779 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for MIR6779 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR6779 Gene

Variant ID Type Subtype PubMed ID
nsv1146669 OTHER inversion 26484159
nsv2045 CNV insertion 18451855
nsv833439 CNV loss 17160897

Additional Variant Information for MIR6779 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6779

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR6779 Gene

Disorders for MIR6779 Gene

Additional Disease Information for MIR6779

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR6779 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6779 Gene

Publications for MIR6779 Gene

  1. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

ExternalLinks

View latest publications for MIR6779 gene in Mastermind

Products for MIR6779 Gene

Sources for MIR6779 Gene