MIR6514 Gene (RNA Gene)

MicroRNA 6514

GC11M062792
GIFtS:
9
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR6514 Gene

Data sources for MIR6514 Gene:

Subcategory (RNA class) for MIR6514 Gene

miRNA

Aliases for MIR6514 Gene

External Ids for MIR6514 Gene

Previous GeneCards Identifiers for MIR6514 Gene

  • GC11U902190

Summaries for MIR6514 Gene

Entrez Gene Summary for MIR6514 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6514 Gene

MIR6514 (MicroRNA 6514) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR6514 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR6514 Gene

Genomics for MIR6514 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR6514 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J062790 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +1.1 1121 2.9 TBP MXD4 SMAD5 ETS1 MBD2 ZNF217 POLR2A ELF1 THAP11 ARNT TMEM223 MN297054 MIR6514 MIR6748 lnc-TMEM223-1 piR-55414 BSCL2 SNHG1 NXF1 CSKMT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6514 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR6514 Gene

Latest Assembly
chr11:62,792,702-62,792,771
(GRCh38/hg38)
Size:
70 bases
Orientation:
Minus strand

Previous Assembly
chr11:62,560,174-62,560,243
(GRCh37/hg19 by Entrez Gene)
Size:
70 bases
Orientation:
Minus strand

Genomic View for MIR6514 Gene

Genes around MIR6514 on UCSC Golden Path with GeneCards custom track
MIR6514 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR6514 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6514 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR6514 Gene

Proteins for MIR6514 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for MIR6514 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6514 Gene

Domains & Families for MIR6514 Gene

Gene Families for MIR6514 Gene

HGNC:
genes like me logo Genes that share domains with MIR6514: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR6514 Gene

Function for MIR6514 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6514 Gene

Localization for MIR6514 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6514 Gene

Pathways & Interactions for MIR6514 Gene

PathCards logo

SuperPathways for MIR6514 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR6514 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR6514 Gene

Drugs & Compounds for MIR6514 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for MIR6514 Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR6514 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BA81_9606 precursor_RNA 70 4

RefSeq: NR_106769,

Ensembl: ENST00000622549 (view in UCSC) ,

miRBase: MI0022226,

ENA: LM611752.1:1..70:precursor_RNA,

URS000075B538_9606 miRNA 23 4

RefSeq: NR_106769,

LncBase: hsa-miR-6514-5p,

miRBase: MIMAT0025484,

ENA: LM383125.1:1..23:ncRNA, LM611752.1:1..23:ncRNA,

URS000075C48C_9606 miRNA 21 3

RefSeq: NR_106769,

miRBase: MIMAT0025485,

ENA: LM611752.1:50..70:ncRNA,

MIR6514 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR6514 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6514 Gene

No ASD Table

Relevant External Links for MIR6514 Gene

GeneLoc Exon Structure for
MIR6514

Expression for MIR6514 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6514 Gene

Orthologs for MIR6514 Gene

Evolution for MIR6514 Gene

ENSEMBL:
Gene Tree for MIR6514 (if available)
TreeFam:
Gene Tree for MIR6514 (if available)

No data available for Orthologs for MIR6514 Gene

Paralogs for MIR6514 Gene

No data available for Paralogs for MIR6514 Gene

Variants for MIR6514 Gene

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  1. SNP Genotyping and Copy Number Assays for research

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MIR6514 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs369105346 Likely Benign: not provided 62,792,705(-) G/T
NM_006362.5(NXF1):c.1761-4C>A 		NON_CODING_TRANSCRIPT_VARIANT,INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR6514 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR6514 Gene

Variant ID Type Subtype PubMed ID
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for MIR6514 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6514

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR6514 Gene

Disorders for MIR6514 Gene

Additional Disease Information for MIR6514

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR6514 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6514 Gene

Publications for MIR6514 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3
  2. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. (PMID: 21807764) Joyce CE … Bowcock AM (Human molecular genetics 2011) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

ExternalLinks

View latest publications for MIR6514 gene in Mastermind

Products for MIR6514 Gene

Sources for MIR6514 Gene