microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR5696 Gene

Data sources for MIR5696 Gene:

Subcategory (RNA class) for MIR5696 Gene

miRNA

Aliases for MIR5696 Gene

External Ids for MIR5696 Gene

Previous GeneCards Identifiers for MIR5696 Gene

  • GC02U902490
  • GC02P101927

Summaries for MIR5696 Gene

Entrez Gene Summary for MIR5696 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5696 Gene

MIR5696 (MicroRNA 5696) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5696 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR5696 Gene

Genomics for MIR5696 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR5696 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J101305 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.8 -811 7.2 TBP ZBTB10 BCL11A MXD4 CEBPA MNT IKZF1 SMAD5 ETS1 IRF2 RNF149 HSALNG0017364 HSALNG0017365 LOC105373512 MIR5696 SNORD89 IL1R1 MAP4K4 RPL31 lnc-TBC1D8-5
GH02J101315 Enhancer 0.2 Ensembl 0.4 +6.1 6050 1 piR-44253-013 SNORD89 CREG2 MIR5696 RNF149
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR5696 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR5696 Gene

Latest Assembly
chr2:101,309,450-101,309,534
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand

Previous Assembly
chr2:101,925,912-101,925,996
(GRCh37/hg19 by Entrez Gene)
Size:
85 bases
Orientation:
Plus strand

chr2:101,925,912-101,925,996
(GRCh37/hg19 by Ensembl)
Size:
85 bases
Orientation:
Plus strand

Genomic View for MIR5696 Gene

Genes around MIR5696 on UCSC Golden Path with GeneCards custom track
MIR5696 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR5696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5696 Gene

Proteins for MIR5696 Gene

Post-translational modifications for MIR5696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5696 Gene

Domains & Families for MIR5696 Gene

Gene Families for MIR5696 Gene

HGNC:
genes like me logo Genes that share domains with MIR5696: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR5696 Gene

Function for MIR5696 Gene

Phenotypes From GWAS Catalog for MIR5696 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5696 Gene

Localization for MIR5696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5696 Gene

Pathways & Interactions for MIR5696 Gene

PathCards logo

SuperPathways for MIR5696 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR5696 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR5696 Gene

Drugs & Compounds for MIR5696 Gene

No Compound Related Data Available

Transcripts for MIR5696 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR5696 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E5F5_9606 precursor_RNA 85 3

RefSeq: NR_049881,

Ensembl: ENST00000578474 (view in UCSC) ,

miRBase: MI0019303,

URS000075A304_9606 miRNA 22 2

RefSeq: NR_049881,

miRBase: MIMAT0022489,

URS00002528F5_9606 miRNA 21 1

ENA: AB372697.1:1..21:ncRNA,

MIR5696 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5696 Gene

No ASD Table

Relevant External Links for MIR5696 Gene

GeneLoc Exon Structure for
MIR5696

No data available for mRNA/cDNA for MIR5696 Gene

Expression for MIR5696 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5696 Gene

genes like me logo Genes that share expression patterns with MIR5696: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5696 Gene

Orthologs for MIR5696 Gene

Evolution for MIR5696 Gene

ENSEMBL:
Gene Tree for MIR5696 (if available)
TreeFam:
Gene Tree for MIR5696 (if available)

No data available for Orthologs for MIR5696 Gene

Paralogs for MIR5696 Gene

No data available for Paralogs for MIR5696 Gene

Variants for MIR5696 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR5696 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR5696 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV loss 18971310
esv3892993 CNV gain 25118596

Additional Variant Information for MIR5696 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5696

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR5696 Gene

Disorders for MIR5696 Gene

Additional Disease Information for MIR5696

No disorders were found for MIR5696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5696 Gene

Publications for MIR5696 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A … Wang Y (PloS one 2011) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR5696 Gene

Sources for MIR5696 Gene