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Aliases for MIR5690 Gene

Subcategory (RNA class) for MIR5690 Gene

miRNA

Quality Score for this RNA gene is

18

Aliases for MIR5690 Gene

  • MicroRNA 5690 2 3 5
  • Hsa-Mir-5690 3

External Ids for MIR5690 Gene

Previous GeneCards Identifiers for MIR5690 Gene

  • GC06U902272
  • GC06M035634
  • GC06M035635
  • GC06M035737
  • GC06M035755
  • GC06M036092
  • GC06M036304
  • GC06M036671
  • GC06M037024
  • GC06M037374
  • GC06M037730
  • GC06M038076

Summaries for MIR5690 Gene

Entrez Gene Summary for MIR5690 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5690 Gene

MIR5690 (MicroRNA 5690) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5690 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5690 Gene

Genomics for MIR5690 Gene

GeneHancer (GH) Regulatory Elements for MIR5690 Gene

Promoters and enhancers for MIR5690 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J035662 Enhancer 0.9 Ensembl ENCODE 650.7 +0.6 645 3.8 HDAC1 BCOR KLF1 PKNOX1 USF1 ZMYM3 CHAMP1 ZFHX2 EGR1 SCRT2 MIR5690 FKBP5 ARMC12 ENSG00000232909 MAPK14 PPARD GC06M038964
GH06J035686 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.3 -23.0 -23028 3.6 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 FKBP5 TAF11 SRSF3 ENSG00000272374 MAPK14 ZNF76 RPL10A ARMC12 ENSG00000232909 STK38
GH06J035667 Enhancer 0.8 Ensembl ENCODE 0.7 -4.1 -4119 3.4 BCOR JUN CEBPB CEBPG PRDM6 POLR2A CEBPA MLLT1 ZBTB33 FKBP5 ARMC12 ENSG00000232909 MIR5690
GH06J035677 Enhancer 0.8 Ensembl ENCODE 0.4 -13.3 -13347 1.9 NFIC SCRT2 CEBPB MNT ZBTB33 PRDM1 TRIM28 SP7 ENSG00000212579 FKBP5 ARMC12 ENSG00000232909 MIR5690
GH06J035690 Enhancer 0.8 Ensembl ENCODE 0.3 -26.8 -26774 1.7 RXRA CEBPB DACH1 MAX RAD21 YY1 TGIF2 MITF SP1 ATF3 FKBP5 ARMC12 ENSG00000232909 ENSG00000212579 ZNF76 MIR5690
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5690 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5690 Gene

Genomic Locations for MIR5690 Gene
chr6:35,664,717-35,664,789
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr6:35,632,494-35,632,566
(GRCh37/hg19)
Size:
73 bases
Orientation:
Minus strand

Genomic View for MIR5690 Gene

Genes around MIR5690 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5690 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5690 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5690 Gene

ORGUL Member Location for MIR5690 Gene

ORGUL Member Location for MIR5690 gene

Function for MIR5690 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5690 Gene

Localization for MIR5690 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5690 Gene

Pathways & Interactions for MIR5690 Gene

SuperPathways for MIR5690 Gene

No Data Available

Interacting Proteins for MIR5690 Gene

Gene Ontology (GO) - Biological Process for MIR5690 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5690 Gene

Drugs & Compounds for MIR5690 Gene

No Compound Related Data Available

Transcripts for MIR5690 Gene

mRNA/cDNA for MIR5690 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5690 Gene

No ASD Table

Relevant External Links for MIR5690 Gene

GeneLoc Exon Structure for
MIR5690
ECgene alternative splicing isoforms for
MIR5690

Expression for MIR5690 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5690 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5690 Gene:

MIR5690
genes like me logo Genes that share expression patterns with MIR5690: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5690 Gene

Orthologs for MIR5690 Gene

Evolution for MIR5690 Gene

ENSEMBL:
Gene Tree for MIR5690 (if available)
TreeFam:
Gene Tree for MIR5690 (if available)

No data available for Orthologs for MIR5690 Gene

Paralogs for MIR5690 Gene

No data available for Paralogs for MIR5690 Gene

Variants for MIR5690 Gene

Sequence variations from dbSNP and Humsavar for MIR5690 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000741572 -- 35,665,114(-) T/G upstream_transcript_variant
rs1002379835 -- 35,666,782(-) G/A upstream_transcript_variant
rs1003376291 -- 35,665,628(-) T/C upstream_transcript_variant
rs1005666468 -- 35,665,404(-) C/G upstream_transcript_variant
rs1006843552 -- 35,664,582(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR5690 Gene

Variant ID Type Subtype PubMed ID
nsv821646 CNV loss 15273396
nsv602924 CNV gain 21841781
nsv5258 CNV deletion 18451855
nsv508403 CNV deletion 20534489
esv3608689 CNV gain 21293372
esv2759420 CNV gain 17122850

Additional Variant Information for MIR5690 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5690

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5690 Gene

Disorders for MIR5690 Gene

Additional Disease Information for MIR5690

No disorders were found for MIR5690 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5690 Gene

Publications for MIR5690 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A … Wang Y (PloS one 2011) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR5690 Gene

Sources for MIR5690 Gene

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