microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR5690 Gene

Data sources for MIR5690 Gene:

RNA type for MIR5690 Gene

miRNA

Aliases for MIR5690 Gene

External Ids for MIR5690 Gene

Previous GeneCards Identifiers for MIR5690 Gene

  • GC06U902272
  • GC06M035634
  • GC06M035635
  • GC06M035737
  • GC06M035755
  • GC06M036092
  • GC06M038962
  • GC06M039653
  • GC06M039956
  • GC06M041293
  • GC06M036304
  • GC06M036671
  • GC06M037024
  • GC06M037374
  • GC06M037730
  • GC06M038076
  • GC06M038466
  • GC06M038811
  • GC06M042220
  • GC06M043472

Summaries for MIR5690 Gene

Entrez Gene Summary for MIR5690 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5690 Gene

MIR5690 (MicroRNA 5690) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR5690 Gene

Genomics for MIR5690 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR5690 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J035662 Enhancer 0.7 ENCODE 250.7 +0.6 645 3.8 ZNF623 PRDM10 MAFK EGR1 ZBTB33 ZMYM3 KLF1 KDM1A EGR2 ZNF24 HSALNG0049701-002 MIR5690 FKBP5 ARMC12 ENSG00000232909 MAPK14 PPARD ENSG00000212579 RF00017-4977 HSALNG0049707
GH06J035667 Promoter/Enhancer 0.9 Ensembl ENCODE 0.7 -4.1 -4064 3.3 CEBPA CEBPB NKRF PRDM6 ZBTB33 CEBPG BCOR MLLT1 FKBP5 ARMC12 ENSG00000232909 HSALNG0049701-002 MIR5690 RF00017-4977 HSALNG0049707 RF00017-4984 ENSG00000287458 TULP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR5690 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR5690 Gene

Latest Assembly
chr6:35,664,717-35,664,789
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand

Previous Assembly
chr6:35,632,494-35,632,566
(GRCh37/hg19 by Entrez Gene)
Size:
73 bases
Orientation:
Minus strand

chr6:35,632,494-35,632,566
(GRCh37/hg19 by Ensembl)
Size:
73 bases
Orientation:
Minus strand

Genomic View for MIR5690 Gene

Genes around MIR5690 on UCSC Golden Path with GeneCards custom track
MIR5690 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR5690 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5690 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5690 Gene

Proteins for MIR5690 Gene

Post-translational modifications for MIR5690 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5690 Gene

Domains & Families for MIR5690 Gene

Gene Families for MIR5690 Gene

HGNC:
genes like me logo Genes that share domains with MIR5690: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR5690 Gene

Function for MIR5690 Gene

Phenotypes From GWAS Catalog for MIR5690 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5690 Gene

Localization for MIR5690 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5690 Gene

Pathways & Interactions for MIR5690 Gene

PathCards logo

SuperPathways for MIR5690 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR5690 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR5690 Gene

Drugs & Compounds for MIR5690 Gene

No Compound Related Data Available

Transcripts for MIR5690 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR5690 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075B186_9606 miRNA 21 4

RefSeq: NR_049873,

LncBase: hsa-miR-5690,

miRBase: MIMAT0022482,

TarBase: hsa-miR-5690,

URS000075F055_9606 precursor_RNA 73 3

RefSeq: NR_049873,

Ensembl: ENST00000583739 (view in UCSC) ,

miRBase: MI0019295,

MIR5690 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5690 Gene

No ASD Table

Relevant External Links for MIR5690 Gene

GeneLoc Exon Structure for
MIR5690

No data available for mRNA/cDNA for MIR5690 Gene

Expression for MIR5690 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5690 Gene

genes like me logo Genes that share expression patterns with MIR5690: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5690 Gene

Orthologs for MIR5690 Gene

Evolution for MIR5690 Gene

ENSEMBL:
Gene Tree for MIR5690 (if available)
TreeFam:
Gene Tree for MIR5690 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR5690

No data available for Orthologs for MIR5690 Gene

Paralogs for MIR5690 Gene

No data available for Paralogs for MIR5690 Gene

Variants for MIR5690 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR5690 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR5690 Gene

Variant ID Type Subtype PubMed ID
esv2759420 CNV gain 17122850
esv3608689 CNV gain 21293372
nsv508403 CNV deletion 20534489
nsv5258 CNV deletion 18451855
nsv602924 CNV gain 21841781
nsv821646 CNV loss 15273396

Additional Variant Information for MIR5690 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5690
Leiden Open Variation Database (LOVD)
MIR5690

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR5690 Gene

Disorders for MIR5690 Gene

Additional Disease Information for MIR5690

No disorders were found for MIR5690 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5690 Gene

Publications for MIR5690 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A … Wang Y (PloS one 2011) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR5690 Gene

Sources for MIR5690 Gene