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Aliases for MIR5683 Gene

Subcategory (RNA class) for MIR5683 Gene


Quality Score for this RNA gene is


Aliases for MIR5683 Gene

  • MicroRNA 5683 2 3 5
  • Hsa-Mir-5683 3

External Ids for MIR5683 Gene

Previous GeneCards Identifiers for MIR5683 Gene

  • GC06U902256

Summaries for MIR5683 Gene

Entrez Gene Summary for MIR5683 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5683 Gene

MIR5683 (MicroRNA 5683) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5683 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5683 Gene

Genomics for MIR5683 Gene

GeneHancer (GH) Regulatory Elements for MIR5683 Gene

Promoters and enhancers for MIR5683 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I006164 Enhancer 0.4 FANTOM5 0.8 -5.0 -4977 0.3 ZNF512 F13A1 MIR5683 GC06P006126
GH06I006151 Enhancer 0.2 FANTOM5 0.4 -17.9 -17917 0.3 F13A1 RREB1 MIR5683 GC06P006126
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5683 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5683 Gene

Genomic Locations for MIR5683 Gene
76 bases
Plus strand

Genomic View for MIR5683 Gene

Genes around MIR5683 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5683 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5683 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5683 Gene

Proteins for MIR5683 Gene

Post-translational modifications for MIR5683 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5683 Gene

Domains & Families for MIR5683 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5683 Gene

Function for MIR5683 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5683 Gene

Localization for MIR5683 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5683 Gene

Pathways & Interactions for MIR5683 Gene

SuperPathways for MIR5683 Gene

No Data Available

Interacting Proteins for MIR5683 Gene

Gene Ontology (GO) - Biological Process for MIR5683 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5683 Gene

Drugs & Compounds for MIR5683 Gene

No Compound Related Data Available

Transcripts for MIR5683 Gene

mRNA/cDNA for MIR5683 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5683 Gene

No ASD Table

Relevant External Links for MIR5683 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5683 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5683 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5683 Gene

Orthologs for MIR5683 Gene

Evolution for MIR5683 Gene

Gene Tree for MIR5683 (if available)
Gene Tree for MIR5683 (if available)

No data available for Orthologs for MIR5683 Gene

Paralogs for MIR5683 Gene

No data available for Paralogs for MIR5683 Gene

Variants for MIR5683 Gene

Sequence variations from dbSNP and Humsavar for MIR5683 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs138943514 uncertain-significance, Factor xiii, a subunit, deficiency of 6,167,506(+) C/G upstream_transcript_variant
rs1000409561 -- 6,169,238(+) C/T upstream_transcript_variant
rs1000746313 -- 6,167,606(+) G/A upstream_transcript_variant
rs1001147401 -- 6,169,306(+) T/C upstream_transcript_variant
rs1001428483 -- 6,168,958(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR5683 Gene

Variant ID Type Subtype PubMed ID
nsv436891 CNV insertion 17901297
nsv5184 CNV insertion 18451855

Additional Variant Information for MIR5683 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5683 Gene

Disorders for MIR5683 Gene

Additional Disease Information for MIR5683

No disorders were found for MIR5683 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5683 Gene

Publications for MIR5683 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X … REDSII Chagas Study Group from the NHLBI Retrovirus Epidemiology Donor Study-II Component International (PloS one 2013) 3 58
  2. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A … Wang Y (PloS one 2011) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR5683 Gene

Sources for MIR5683 Gene

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