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Aliases for MIR563 Gene

Subcategory (RNA class) for MIR563 Gene


Quality Score for this RNA gene is


Aliases for MIR563 Gene

  • MicroRNA 563 2 3 5
  • Hsa-Mir-563 3
  • MIRN563 3

External Ids for MIR563 Gene

ORGUL Members for MIR563 Gene

Previous HGNC Symbols for MIR563 Gene

  • MIRN563

Previous GeneCards Identifiers for MIR563 Gene

  • GC03P015891
  • GC03P015915
  • GC03P015875
  • GC03P015876
  • GC03P015878
  • GC03P015880
  • GC03P015882
  • GC03P015884
  • GC03P015886

Summaries for MIR563 Gene

Entrez Gene Summary for MIR563 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR563 Gene

MIR563 (MicroRNA 563) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR563 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR563 Gene

Genomics for MIR563 Gene

GeneHancer (GH) Regulatory Elements for MIR563 Gene

Promoters and enhancers for MIR563 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I015874 Enhancer 0.6 ENCODE 550.8 +1.4 1440 1 SMARCE1 MEIS2 JUN DPF2 FOSL1 GATA3 JUND IKZF1 ZNF629 SCRT2 GC03P015874 MIR563 GC03P015873 IMPDH1P8
GH03I015981 Enhancer 1 FANTOM5 Ensembl ENCODE 10.6 +109.5 109495 2.6 PKNOX1 MAX USF2 CEBPB JUND ZBTB48 POLR2A FOS PRDM10 MIR563 DPH3 OXNAD1 GC03P015879 GALNT15 GC03M015947
GH03I015899 Enhancer 0.7 ENCODE 11 +25.9 25885 1 MEIS2 ATF1 PKNOX1 USF1 MAX CHAMP1 FOSL1 ZNF316 CBFA2T2 NFE2 MIR563 IMPDH1P8 EAF1-AS1 GC03P015879 GALNT15
GH03I015903 Enhancer 0.6 ENCODE 12.5 +29.9 29871 1 RXRA TAF1 CEBPB RAD21 JUND ATF3 SCRT2 HNF4A MIR563 IMPDH1P8 GC03P015879 GALNT15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR563 Gene

Genomic Locations for MIR563 Gene
79 bases
Plus strand

Genomic View for MIR563 Gene

Genes around MIR563 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR563 Gene

Proteins for MIR563 Gene

Post-translational modifications for MIR563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR563 Gene

Domains & Families for MIR563 Gene

Gene Families for MIR563 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR563: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR563 Gene

Function for MIR563 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR563 Gene

Localization for MIR563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR563 Gene

Pathways & Interactions for MIR563 Gene

SuperPathways for MIR563 Gene

No Data Available

Interacting Proteins for MIR563 Gene

Gene Ontology (GO) - Biological Process for MIR563 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR563 Gene

Drugs & Compounds for MIR563 Gene

No Compound Related Data Available

Transcripts for MIR563 Gene

mRNA/cDNA for MIR563 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR563 Gene

No ASD Table

Relevant External Links for MIR563 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR563 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR563 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR563 Gene:

genes like me logo Genes that share expression patterns with MIR563: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR563 Gene

Orthologs for MIR563 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR563 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 34
  • 97 (a)
(Bos Taurus)
Mammalia -- 34
  • 74 (a)
Species where no ortholog for MIR563 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR563 Gene

Gene Tree for MIR563 (if available)
Gene Tree for MIR563 (if available)

Paralogs for MIR563 Gene

No data available for Paralogs for MIR563 Gene

Variants for MIR563 Gene

Sequence variations from dbSNP and Humsavar for MIR563 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1002801608 -- 15,872,552(+) A/G upstream_transcript_variant
rs1003393947 -- 15,873,987(+) C/A downstream_transcript_variant
rs1003517116 -- 15,874,142(+) T/C downstream_transcript_variant
rs1005848523 -- 15,874,170(+) A/G downstream_transcript_variant
rs1006197654 -- 15,872,242(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR563 Gene

Variant ID Type Subtype PubMed ID
nsv529014 CNV loss 19592680

Additional Variant Information for MIR563 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR563 Gene

Disorders for MIR563 Gene

Additional Disease Information for MIR563

No disorders were found for MIR563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR563 Gene

Publications for MIR563 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
  2. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 3 58

Products for MIR563 Gene

Sources for MIR563 Gene

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