microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR548Q Gene

Data sources for MIR548Q Gene:

Subcategory (RNA class) for MIR548Q Gene


Aliases for MIR548Q Gene

External Ids for MIR548Q Gene

Previous GeneCards Identifiers for MIR548Q Gene

  • GC00U929744
  • GC10M012767

Summaries for MIR548Q Gene

Entrez Gene Summary for MIR548Q Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548Q Gene

MIR548Q (MicroRNA 548q) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548Q Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR548Q Gene

Genomics for MIR548Q Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR548Q Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J012725 Enhancer 0.5 Ensembl 250.7 +0.1 52 1 MAFF YY1 ZNF316 MAFK ZBTB40 MAFG EMSY MIR548Q piR-50444-037 CAMK1D OPTN
GH10J012724 Enhancer 0.2 Ensembl 250.7 +0.9 852 0.2 MIR548Q piR-50444-037 CAMK1D OPTN
GH10J012263 Promoter/Enhancer 1.9 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.1 +460.4 460398 3.6 ZSCAN16 SP1 BCL11A FEZF1 MNT IKZF1 HES1 MBD2 POLR2A CTCF lnc-CDC123-2 CAMK1D MIR548Q UPF2 SEC61A2 piR-57133-040 NUDT5
GH10J012240 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 10.2 +482.1 482081 5.2 SP1 BCL11A POLR2A IRF4 EBF1 SPI1 BATF MAX IKZF1 BMI1 HSALNG0076229 CAMK1D MIR548Q NUDT5 UPF2 SEC61A2 ENSG00000228302 piR-43107-030 CDC123
GH10J012603 Enhancer 1 ENCODE dbSUPER 10.7 +120.1 120108 4.1 CEBPA ZNF217 POLR2A ELF1 MBD2 CUX1 FOXA2 SAP130 RXRA ZBTB33 MIR548Q RF00017-588 MIR4481 CAMK1D OPTN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR548Q on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR548Q Gene

Latest Assembly
100 bases
Minus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
100 bases
Minus strand

(GRCh37/hg19 by Ensembl)
100 bases
Minus strand

Genomic View for MIR548Q Gene

Genes around MIR548Q on UCSC Golden Path with GeneCards custom track
MIR548Q in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR548Q Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548Q Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548Q Gene

Proteins for MIR548Q Gene

Post-translational modifications for MIR548Q Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548Q Gene

Domains & Families for MIR548Q Gene

Gene Families for MIR548Q Gene

genes like me logo Genes that share domains with MIR548Q: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR548Q Gene

Function for MIR548Q Gene

Phenotypes From GWAS Catalog for MIR548Q Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548Q Gene

Localization for MIR548Q Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR548Q gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548Q Gene

Pathways & Interactions for MIR548Q Gene

PathCards logo

SuperPathways for MIR548Q Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR548Q Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR548Q Gene

Drugs & Compounds for MIR548Q Gene

No Compound Related Data Available

Transcripts for MIR548Q Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR548Q Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000258D51_9606 miRNA 22 5

RefSeq: NR_031752,

LncBase: hsa-miR-548q,

miRBase: MIMAT0011163,

TarBase: hsa-miR-548q,

ENA: LM381225.1:1..22:ncRNA, LM610639.1:8..29:ncRNA,

URS000075D317_9606 precursor_RNA 100 4

RefSeq: NR_031752,

Ensembl: ENST00000408404 (view in UCSC) ,

miRBase: MI0010637,

ENA: LM610639.1:1..100:precursor_RNA,

MIR548Q in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548Q Gene

No ASD Table

Relevant External Links for MIR548Q Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for MIR548Q Gene

Expression for MIR548Q Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR548Q Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR548Q

genes like me logo Genes that share expression patterns with MIR548Q: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548Q Gene

Orthologs for MIR548Q Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548Q Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 31
  • 97 (a)
Species where no ortholog for MIR548Q was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for MIR548Q Gene

Gene Tree for MIR548Q (if available)
Gene Tree for MIR548Q (if available)

Paralogs for MIR548Q Gene

No data available for Paralogs for MIR548Q Gene

Variants for MIR548Q Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR548Q Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR548Q Gene

Variant ID Type Subtype PubMed ID
esv3622363 CNV gain 21293372

Additional Variant Information for MIR548Q Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR548Q Gene

Disorders for MIR548Q Gene

Additional Disease Information for MIR548Q

No disorders were found for MIR548Q Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548Q Gene

Publications for MIR548Q Gene

  1. miR-1185-1 and miR-548q Are Biomarkers of Response to Weight Loss and Regulate the Expression of GSK3B. (PMID: 31801236) Garcia-Lacarte M … Milagro FI (Cells 2019) 3
  2. Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries. (PMID: 19390579) Wyman SK … Tewari M (PloS one 2009) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR548Q Gene

Sources for MIR548Q Gene