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Aliases for MIR548P Gene

Subcategory (RNA class) for MIR548P Gene


Quality Score for this RNA gene is


Aliases for MIR548P Gene

  • MicroRNA 548p 2 3 5
  • Hsa-Mir-548p 3
  • MIRN548P 3

External Ids for MIR548P Gene

Previous HGNC Symbols for MIR548P Gene

  • MIRN548P

Previous GeneCards Identifiers for MIR548P Gene

  • GC00U923044
  • GC05M100181

Summaries for MIR548P Gene

Entrez Gene Summary for MIR548P Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548P Gene

MIR548P (MicroRNA 548p) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548P Gene

Genomics for MIR548P Gene

GeneHancer (GH) Regulatory Elements for MIR548P Gene

Promoters and enhancers for MIR548P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I100840 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -25.0 -24994 3 JUN BACH1 BATF ZIC2 IRF4 RELA ATF7 FOSL2 ETV6 BCLAF1 MIR548P ST8SIA4 GC05M100870
GH05I100776 Enhancer 1.4 FANTOM5 Ensembl ENCODE 11.5 +39.0 39039 2.2 HDGF SMAD1 ZNF133 BMI1 BATF IRF4 RFX5 ATF7 ETV6 FOS MIR548P ST8SIA4 RN7SKP62
GH05I100888 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 11.1 -73.5 -73487 3.6 PKNOX1 BACH1 CEBPG BATF IRF4 RELA POLR2A NFATC1 ATF7 FOSL2 MIR548P ST8SIA4 GC05M100870
GH05I100779 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.3 +36.3 36295 1.7 CTCF PKNOX1 EBF1 CEBPG RELA POLR2A ATF7 ETV6 IKZF2 RUNX3 MIR548P ST8SIA4 RN7SKP62
GH05I100845 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.9 -30.5 -30502 2.3 JUN PAX8 MIR548P ST8SIA4 GC05M100870
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR548P on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548P Gene

Genomic Locations for MIR548P Gene
84 bases
Minus strand

Genomic View for MIR548P Gene

Genes around MIR548P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548P Gene

ORGUL Member Location for MIR548P Gene

ORGUL Member Location for MIR548P gene

Proteins for MIR548P Gene

Post-translational modifications for MIR548P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548P Gene

Domains & Families for MIR548P Gene

Gene Families for MIR548P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548P Gene

Function for MIR548P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548P Gene

Localization for MIR548P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548P Gene

Pathways & Interactions for MIR548P Gene

SuperPathways for MIR548P Gene

No Data Available

Interacting Proteins for MIR548P Gene

Gene Ontology (GO) - Biological Process for MIR548P Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548P Gene

Drugs & Compounds for MIR548P Gene

No Compound Related Data Available

Transcripts for MIR548P Gene

mRNA/cDNA for MIR548P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548P Gene

No ASD Table

Relevant External Links for MIR548P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548P Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548P Gene:

genes like me logo Genes that share expression patterns with MIR548P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548P Gene

Orthologs for MIR548P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-548p 34
  • 100 (a)
Species where no ortholog for MIR548P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548P Gene

Gene Tree for MIR548P (if available)
Gene Tree for MIR548P (if available)

Paralogs for MIR548P Gene

No data available for Paralogs for MIR548P Gene

Variants for MIR548P Gene

Sequence variations from dbSNP and Humsavar for MIR548P Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000114274 -- 100,817,527(-) T/C upstream_transcript_variant
rs1002456439 -- 100,817,573(-) C/T upstream_transcript_variant
rs1003237271 -- 100,816,230(-) A/G downstream_transcript_variant
rs1003392330 -- 100,816,138(-) G/A downstream_transcript_variant
rs1006477636 -- 100,818,540(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR548P Gene

Variant ID Type Subtype PubMed ID
nsv1023765 CNV loss 25217958
nsv1021183 CNV gain 25217958
esv3890678 CNV gain 25118596

Additional Variant Information for MIR548P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548P Gene

Disorders for MIR548P Gene

Additional Disease Information for MIR548P

No disorders were found for MIR548P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548P Gene

Publications for MIR548P Gene

  1. Human MicroRNA-548p Decreases Hepatic Apolipoprotein B Secretion and Lipid Synthesis. (PMID: 28336556) Zhou L … Hussain MM (Arteriosclerosis, thrombosis, and vascular biology 2017) 3 58
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR548P Gene

Sources for MIR548P Gene

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