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Aliases for MIR548I3 Gene

Subcategory (RNA class) for MIR548I3 Gene


Quality Score for this RNA gene is


Aliases for MIR548I3 Gene

  • MicroRNA 548i-3 2 3 5
  • Hsa-Mir-548i-3 3
  • Mir-548i-3 3
  • MIR548I-3 3
  • MIRN548I3 3

External Ids for MIR548I3 Gene

Previous HGNC Symbols for MIR548I3 Gene

  • MIRN548I3

Previous GeneCards Identifiers for MIR548I3 Gene

  • GC00U923031
  • GC08M007984
  • GC08M007946

Summaries for MIR548I3 Gene

Entrez Gene Summary for MIR548I3 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548I3 Gene

MIR548I3 (MicroRNA 548i-3) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548I3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548I3 Gene

Genomics for MIR548I3 Gene

Genomic Locations for MIR548I3 Gene

Genomic Locations for MIR548I3 Gene
149 bases
Minus strand

Genomic View for MIR548I3 Gene

Genes around MIR548I3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548I3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548I3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548I3 Gene

ORGUL Member Location for MIR548I3 Gene

ORGUL Member Location for MIR548I3 gene

No data available for GeneHancer (GH) Regulatory Elements for MIR548I3 Gene

Proteins for MIR548I3 Gene

Post-translational modifications for MIR548I3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548I3 Gene

Domains & Families for MIR548I3 Gene

Gene Families for MIR548I3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548I3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548I3 Gene

Function for MIR548I3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548I3 Gene

Localization for MIR548I3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548I3 Gene

Pathways & Interactions for MIR548I3 Gene

SuperPathways for MIR548I3 Gene

No Data Available

Interacting Proteins for MIR548I3 Gene

Gene Ontology (GO) - Biological Process for MIR548I3 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548I3 Gene

Drugs & Compounds for MIR548I3 Gene

No Compound Related Data Available

Transcripts for MIR548I3 Gene

mRNA/cDNA for MIR548I3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548I3 Gene

No ASD Table

Relevant External Links for MIR548I3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548I3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548I3 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548I3 Gene:

genes like me logo Genes that share expression patterns with MIR548I3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548I3 Gene

Orthologs for MIR548I3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548I3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-548i-4 34
  • 84 (a)
Species where no ortholog for MIR548I3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548I3 Gene

Gene Tree for MIR548I3 (if available)
Gene Tree for MIR548I3 (if available)

Paralogs for MIR548I3 Gene

No data available for Paralogs for MIR548I3 Gene

Variants for MIR548I3 Gene

Sequence variations from dbSNP and Humsavar for MIR548I3 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1002063072 -- 8,088,688(-) A/G downstream_transcript_variant
rs1005864057 -- 8,090,932(-) T/C upstream_transcript_variant
rs10090808 -- 8,090,477(-) C/T upstream_transcript_variant
rs10107841 -- 8,090,454(-) G/A upstream_transcript_variant
rs1013761462 -- 8,089,860(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR548I3 Gene

Variant ID Type Subtype PubMed ID
dgv11914n54 CNV gain 21841781
dgv11928n54 CNV gain 21841781
dgv2035e212 CNV gain 25503493
dgv262n111 CNV deletion 26073780
dgv6887n100 CNV loss 25217958
dgv6890n100 CNV gain 25217958
dgv6896n100 CNV gain+loss 25217958
dgv6912n100 CNV loss 25217958
dgv6915n100 CNV gain 25217958
dgv6950n100 CNV loss 25217958
dgv6955n100 CNV gain 25217958
dgv6964n100 CNV gain 25217958
dgv6976n100 CNV loss 25217958
dgv6980n100 CNV gain 25217958
dgv6987n100 CNV loss 25217958
dgv6988n100 CNV loss 25217958
dgv6989n100 CNV gain 25217958
dgv6990n100 CNV loss 25217958
dgv6991n100 CNV loss 25217958
dgv6992n100 CNV gain 25217958
dgv6993n100 CNV gain+loss 25217958
dgv6994n100 CNV gain+loss 25217958
dgv6995n100 CNV loss 25217958
dgv6996n100 CNV gain 25217958
dgv6997n100 CNV loss 25217958
dgv6998n100 CNV loss 25217958
esv25631 CNV gain+loss 19812545
esv2752265 CNV gain 17911159
esv2752266 CNV loss 17911159
esv2759589 CNV gain+loss 17122850
esv2761169 CNV gain+loss 21179565
esv2764098 CNV gain+loss 21179565
esv3891318 CNV gain 25118596
esv3891319 CNV gain 25118596
nsv1016847 CNV gain 25217958
nsv1027782 CNV loss 25217958
nsv1031092 CNV gain+loss 25217958
nsv1031653 CNV gain 25217958
nsv1075107 CNV deletion 25765185
nsv1112958 CNV deletion 24896259
nsv1144222 CNV deletion 24896259
nsv1161716 CNV duplication 26073780
nsv428194 CNV gain+loss 18775914
nsv469790 CNV loss 16826518
nsv469850 CNV gain+loss 16826518
nsv471650 CNV gain+loss 15918152
nsv471651 CNV gain+loss 15918152
nsv510977 OTHER complex 20534489
nsv515968 CNV gain+loss 19592680
nsv610137 CNV loss 21841781
nsv610142 CNV loss 21841781
nsv820854 CNV deletion 20802225
nsv821656 CNV gain 15273396
nsv951093 CNV deletion 24416366
nsv981908 CNV duplication 23825009

Additional Variant Information for MIR548I3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548I3 Gene

Disorders for MIR548I3 Gene

Additional Disease Information for MIR548I3

No disorders were found for MIR548I3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548I3 Gene

Publications for MIR548I3 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR548I3 Gene

Sources for MIR548I3 Gene

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