microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR548H3 Gene

Subcategory (RNA class) for MIR548H3 Gene


Number of RNA Genes sources:

5 / 14

Aliases for MIR548H3 Gene

  • MicroRNA 548h-3 2 3 5
  • Hsa-MiR-548h-5p 166 177
  • Hsa-Mir-548h-3 3
  • MIMAT0005928 51
  • MIR548H-3 3
  • MIRN548H3 3
  • MI0006413 51
  • MIR548H3 2
  • RF01061 172

External Ids for MIR548H3 Gene

Previous HGNC Symbols for MIR548H3 Gene

  • MIRN548H3

Previous GeneCards Identifiers for MIR548H3 Gene

  • GC00U922909
  • GC17M013388
  • GC17M013446

Summaries for MIR548H3 Gene

Entrez Gene Summary for MIR548H3 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548H3 Gene

MIR548H3 (MicroRNA 548h-3) is an RNA Gene, and is affiliated with the miRNA class.

Rfam classification for MIR548H3 Gene

Additional gene information for MIR548H3 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR548H3 Gene

Genomics for MIR548H3 Gene

GeneHancer (GH) Regulatory Elements for MIR548H3 Gene

Promoters and enhancers for MIR548H3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J013543 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 500.7 -1.0 -1022 2.1 JUND FOS REST NR3C1 ZBTB40 TAF1 BHLHE40 CHD1 POLR2A SIN3A MIR548H3 HS3ST3A1 piR-56480-024
GH17J013508 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.6 +33.8 33790 3.1 PHB2 ZBTB11 AFF1 TARDBP REST HES1 MYC CTBP1 TAF9B MXI1 MIR548H3 HSALNG0114674 HSALNG0114667 HS3ST3A1
GH17J013513 Enhancer 0.7 ENCODE 11.6 +30.5 30467 0.2 AFF1 REST MYC MAX ZNF592 RBBP5 IRF2 EZH2 FOXK2 PRDM10 MIR548H3 HSALNG0114674 HSALNG0114667 HS3ST3A1
GH17J013518 Enhancer 0.4 ENCODE 11.8 +24.8 24767 0.2 POLR2A SETDB1 CBFA2T3 MIR548H3 HSALNG0114674 HSALNG0114667 HS3ST3A1
GH17J013538 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 +2.8 2783 5.1 JUND FOS AFF1 MYC CTBP1 TAF9B HDAC3 NCOR1 MBD2 ZNF316 ARHGAP44 HS3ST3A1 MIR548H3 HSALNG0114674
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR548H3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548H3 Gene

Genomic Locations for MIR548H3 Gene
118 bases
Minus strand
118 bases
Minus strand

Genomic View for MIR548H3 Gene

Genes around MIR548H3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548H3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548H3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548H3 Gene

Proteins for MIR548H3 Gene

Post-translational modifications for MIR548H3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548H3 Gene

Domains & Families for MIR548H3 Gene

Gene Families for MIR548H3 Gene

genes like me logo Genes that share domains with MIR548H3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR548H3 Gene

Function for MIR548H3 Gene

Phenotypes From GWAS Catalog for MIR548H3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548H3 Gene

Localization for MIR548H3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548H3 Gene

Pathways & Interactions for MIR548H3 Gene

PathCards logo

SuperPathways for MIR548H3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR548H3 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR548H3 Gene

Drugs & Compounds for MIR548H3 Gene

No Compound Related Data Available

Transcripts for MIR548H3 Gene

mRNA/cDNA for MIR548H3 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 miRBase transcripts :
7 ENA transcripts :
1 LncBase transcripts :
1 Rfam transcripts :
1 TarBase transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548H3 Gene

No ASD Table

Relevant External Links for MIR548H3 Gene

GeneLoc Exon Structure for

Expression for MIR548H3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR548H3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR548H3

genes like me logo Genes that share expression patterns with MIR548H3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548H3 Gene

Orthologs for MIR548H3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548H3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 31
  • 80 (a)
Species where no ortholog for MIR548H3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548H3 Gene

Gene Tree for MIR548H3 (if available)
Gene Tree for MIR548H3 (if available)

Paralogs for MIR548H3 Gene

No data available for Paralogs for MIR548H3 Gene

Variants for MIR548H3 Gene

Additional dbSNP identifiers (rs#s) for MIR548H3 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR548H3 Gene

Variant ID Type Subtype PubMed ID
esv34170 CNV loss 18971310
esv3572409 CNV gain 25503493
nsv833375 CNV loss 17160897

Additional Variant Information for MIR548H3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR548H3 Gene

Disorders for MIR548H3 Gene

Additional Disease Information for MIR548H3

No disorders were found for MIR548H3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548H3 Gene

Publications for MIR548H3 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 54
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 54

Products for MIR548H3 Gene

Sources for MIR548H3 Gene