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Aliases for MIR548AU Gene

Subcategory (RNA class) for MIR548AU Gene


Quality Score for this RNA gene is


Aliases for MIR548AU Gene

  • MicroRNA 548au 2 3 5
  • Hsa-Mir-548au 3

External Ids for MIR548AU Gene

Previous GeneCards Identifiers for MIR548AU Gene

  • GC09U901752

Summaries for MIR548AU Gene

Entrez Gene Summary for MIR548AU Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AU Gene

MIR548AU (MicroRNA 548au) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548AU Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AU Gene

Genomics for MIR548AU Gene

GeneHancer (GH) Regulatory Elements for MIR548AU Gene

Promoters and enhancers for MIR548AU Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I093593 Enhancer 0.9 ENCODE dbSUPER 550.8 -0.9 -851 1.7 HDAC1 KLF1 PKNOX1 ETV1 TEAD4 ZMYM3 ZIC2 CTBP1 ZNF316 POLR2A MIR548AU RNU6-829P ENSG00000227603 PHF2
GH09I093595 Enhancer 0.4 dbSUPER 550.8 +1.3 1344 1.1 GATA3 ZNF316 ZNF24 MIR548AU RNU6-829P ENSG00000227603 PHF2 LOC101928014
GH09I093574 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.4 -18.0 -18038 4.3 HDGF HDAC1 CLOCK NFRKB SIN3A YY1 ZNF335 ZNF766 GLIS2 EGR1 GC09M093574 PHF2 ENSG00000227603 MFSD14B MIR548AU
GH09I093592 Enhancer 0.7 ENCODE dbSUPER 0.8 -2.0 -2017 0.2 CTCF SAP130 ARID4B RAD21 ZNF48 RNU6-829P ENSG00000227603 MIR548AU PHF2
GH09I093594 Enhancer 0.7 ENCODE dbSUPER 0.8 -2.2 -2227 0.2 CTCF RFX1 SAP130 ARID4B ZNF48 RFX5 RNU6-829P ENSG00000227603 MIR548AU PHF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR548AU on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548AU Gene

Genomic Locations for MIR548AU Gene
54 bases
Plus strand

Genomic View for MIR548AU Gene

Genes around MIR548AU on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AU Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AU Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AU Gene

Proteins for MIR548AU Gene

Post-translational modifications for MIR548AU Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AU Gene

Domains & Families for MIR548AU Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AU Gene

Function for MIR548AU Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AU Gene

Localization for MIR548AU Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548AU Gene

Pathways & Interactions for MIR548AU Gene

SuperPathways for MIR548AU Gene

No Data Available

Interacting Proteins for MIR548AU Gene

Gene Ontology (GO) - Biological Process for MIR548AU Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548AU Gene

Drugs & Compounds for MIR548AU Gene

No Compound Related Data Available

Transcripts for MIR548AU Gene

mRNA/cDNA for MIR548AU Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AU Gene

No ASD Table

Relevant External Links for MIR548AU Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548AU Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AU Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AU Gene

Orthologs for MIR548AU Gene

Evolution for MIR548AU Gene

Gene Tree for MIR548AU (if available)
Gene Tree for MIR548AU (if available)

No data available for Orthologs for MIR548AU Gene

Paralogs for MIR548AU Gene

No data available for Paralogs for MIR548AU Gene

Variants for MIR548AU Gene

Sequence variations from dbSNP and Humsavar for MIR548AU Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1002399879 -- 93,592,920(+) G/A upstream_transcript_variant
rs1002668419 -- 93,594,140(+) C/G upstream_transcript_variant
rs1002720605 -- 93,593,793(+) T/C upstream_transcript_variant
rs1003811710 -- 93,594,330(+) G/C upstream_transcript_variant
rs1004176660 -- 93,592,905(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR548AU Gene

Variant ID Type Subtype PubMed ID
dgv19n6 CNV deletion 16902084
dgv4034n100 CNV gain 25217958
dgv6988n54 CNV loss 21841781
esv1223356 CNV deletion 17803354
esv2164871 CNV deletion 18987734
esv23336 CNV loss 19812545
esv2540661 CNV deletion 19546169
esv2671579 CNV deletion 23128226
esv2674728 CNV deletion 23128226
esv2676455 CNV deletion 23128226
esv2720482 CNV deletion 23290073
esv2720493 CNV deletion 23290073
esv2762271 CNV loss 21179565
esv3305769 CNV mobile element insertion 20981092
esv3372818 CNV insertion 20981092
esv3559910 CNV deletion 23714750
esv3591887 CNV loss 21293372
esv3591888 CNV loss 21293372
esv3591890 CNV loss 21293372
esv9107 CNV loss 19470904
esv990602 CNV deletion 20482838
nsv1071610 CNV deletion 25765185
nsv1114124 CNV deletion 24896259
nsv1152379 CNV deletion 26484159
nsv1160839 CNV deletion 26073780
nsv213203 CNV deletion 16902084
nsv2870 CNV deletion 18451855
nsv471617 CNV gain 15918152
nsv480289 CNV novel sequence insertion 20440878
nsv507026 OTHER sequence alteration 20534489
nsv509311 CNV insertion 20534489
nsv528330 CNV gain 19592680
nsv824984 CNV gain 20364138
nsv955052 CNV deletion 24416366

Additional Variant Information for MIR548AU Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AU Gene

Disorders for MIR548AU Gene

Additional Disease Information for MIR548AU

No disorders were found for MIR548AU Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AU Gene

Publications for MIR548AU Gene

  1. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) Friedländer MR … Rajewsky N (Nucleic acids research 2012) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR548AU Gene

Sources for MIR548AU Gene

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