Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR548AJ2 Gene

Subcategory (RNA class) for MIR548AJ2 Gene


Quality Score for this RNA gene is


Aliases for MIR548AJ2 Gene

  • MicroRNA 548aj-2 2 3 5
  • Hsa-Mir-548aj-2 3

External Ids for MIR548AJ2 Gene

Previous GeneCards Identifiers for MIR548AJ2 Gene

  • GC0XU901747
  • GC0XM037885

Summaries for MIR548AJ2 Gene

Entrez Gene Summary for MIR548AJ2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AJ2 Gene

MIR548AJ2 (MicroRNA 548aj-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548AJ2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AJ2 Gene

Genomics for MIR548AJ2 Gene

GeneHancer (GH) Regulatory Elements for MIR548AJ2 Gene

Promoters and enhancers for MIR548AJ2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI038005 Promoter/Enhancer 1.1 EPDnew ENCODE 0.4 +17.6 17581 1.3 SMARCE1 CBFA2T3 DPF2 FOXA1 ZNF217 CTBP1 ATF4 GATA3 NCOR1 TRIM28 SYTL5 ENSG00000229674 MIR548AJ2 ENSG00000250349
GH0XI038061 Enhancer 1 ENCODE 0.3 -37.5 -37537 0.2 PKNOX1 ARNT FEZF1 ZNF2 GLIS2 ZNF213 KLF7 FOS KLF13 SP3 TSPAN7 GC0XM038060 GC0XM038061 MIR548AJ2 SYTL5 ENSG00000250349
GH0XI038051 Enhancer 0.7 ENCODE 0.3 -28.3 -28331 1.1 JUN CEBPG ZNF2 ZKSCAN1 FOSL1 SCRT2 FOSL2 ZNF600 FOS ZBTB20 SYTL5 GC0XM038060 MIR548AJ2 ENSG00000250349
GH0XI037994 Enhancer 0.3 ENCODE 0.3 +29.6 29563 0.2 RFX1 ENSG00000229674 MIR548AJ2 SYTL5 ENSG00000250349
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR548AJ2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548AJ2 Gene

Genomic Locations for MIR548AJ2 Gene
92 bases
Minus strand

Genomic View for MIR548AJ2 Gene

Genes around MIR548AJ2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AJ2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AJ2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AJ2 Gene

Proteins for MIR548AJ2 Gene

Post-translational modifications for MIR548AJ2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AJ2 Gene

Domains & Families for MIR548AJ2 Gene

Gene Families for MIR548AJ2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548AJ2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AJ2 Gene

Function for MIR548AJ2 Gene

Phenotypes From GWAS Catalog for MIR548AJ2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AJ2 Gene

Localization for MIR548AJ2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548AJ2 Gene

Pathways & Interactions for MIR548AJ2 Gene

SuperPathways for MIR548AJ2 Gene

No Data Available

Interacting Proteins for MIR548AJ2 Gene

Gene Ontology (GO) - Biological Process for MIR548AJ2 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548AJ2 Gene

Drugs & Compounds for MIR548AJ2 Gene

No Compound Related Data Available

Transcripts for MIR548AJ2 Gene

mRNA/cDNA for MIR548AJ2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AJ2 Gene

No ASD Table

Relevant External Links for MIR548AJ2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548AJ2 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AJ2 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AJ2 Gene

Orthologs for MIR548AJ2 Gene

Evolution for MIR548AJ2 Gene

Gene Tree for MIR548AJ2 (if available)
Gene Tree for MIR548AJ2 (if available)

No data available for Orthologs for MIR548AJ2 Gene

Paralogs for MIR548AJ2 Gene

No data available for Paralogs for MIR548AJ2 Gene

Variants for MIR548AJ2 Gene

Sequence variations from dbSNP and Humsavar for MIR548AJ2 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1002668450 -- 38,023,874(-) C/G downstream_transcript_variant
rs1002783326 -- 38,024,174(-) C/T upstream_transcript_variant
rs1003676871 -- 38,025,141(-) G/A upstream_transcript_variant
rs1003791641 -- 38,025,433(-) G/A upstream_transcript_variant
rs1006902791 -- 38,024,300(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR548AJ2 Gene

Variant ID Type Subtype PubMed ID
nsv519012 CNV gain 19592680
nsv518029 CNV gain 19592680
esv2752323 CNV gain 17911159
dgv2277e212 CNV loss 25503493

Additional Variant Information for MIR548AJ2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AJ2 Gene

Disorders for MIR548AJ2 Gene

Additional Disease Information for MIR548AJ2

No disorders were found for MIR548AJ2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AJ2 Gene

Publications for MIR548AJ2 Gene

  1. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) Schizophrenia Working Group of the Psychiatric Genomics Consortium (Nature 2014) 3 58
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima DD … Hematologic Malignancies Research Consortium (Blood 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR548AJ2 Gene

Sources for MIR548AJ2 Gene

Loading form....