microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR548AD Gene

Subcategory (RNA class) for MIR548AD Gene

miRNA

Number of RNA Genes sources:

2 / 14

Aliases for MIR548AD Gene

  • MicroRNA 548ad 2 3 5
  • Hsa-Mir-548ad 3
  • MIMAT0032114 51
  • MIMAT0032115 51
  • MIMAT0018946 51
  • MI0016770 51
  • MIR548AD 2

External Ids for MIR548AD Gene

Previous GeneCards Identifiers for MIR548AD Gene

  • GC02U902438
  • GC02P035702
  • GC02P035706
  • GC02P035709
  • GC02P035473
  • GC02P035475
  • GC02P035493
  • GC02P035495
  • GC02P035497
  • GC02P035477
  • GC02P035479
  • GC02P035481
  • GC02P035483
  • GC02P035485
  • GC02P035487
  • GC02P035489
  • GC02P035491

Summaries for MIR548AD Gene

Entrez Gene Summary for MIR548AD Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AD Gene

MIR548AD (MicroRNA 548ad) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548AD Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR548AD Gene

Genomics for MIR548AD Gene

GeneHancer (GH) Regulatory Elements for MIR548AD Gene

Promoters and enhancers for MIR548AD Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J035461 Enhancer 0.7 Ensembl ENCODE 0.4 -8.4 -8353 2.8 CTBP1 FOXA2 ESR1 FOXA1 ZBTB40 MAFK GATA3 MIR548AD piR-46138-003
GH02J035468 Enhancer 0.4 Ensembl 0.7 -3.0 -3004 0.4 FOS SMARCA4 EZH2 MIR548AD piR-46138-003
GH02J035443 Enhancer 0.4 Ensembl 0.3 -26.0 -26004 5.2 SPI1 GABPA POLR2A piR-46138-003 MIR548AD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR548AD on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548AD Gene

Genomic Locations for MIR548AD Gene
chr2:35,471,405-35,471,486
(GRCh38/hg38)
Size:
82 bases
Orientation:
Plus strand
chr2:35,696,471-35,696,552
(GRCh37/hg19)
Size:
82 bases
Orientation:
Plus strand

Genomic View for MIR548AD Gene

Genes around MIR548AD on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AD Gene

Proteins for MIR548AD Gene

Post-translational modifications for MIR548AD Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AD Gene

Domains & Families for MIR548AD Gene

Gene Families for MIR548AD Gene

genes like me logo Genes that share domains with MIR548AD: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR548AD Gene

Function for MIR548AD Gene

Phenotypes From GWAS Catalog for MIR548AD Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AD Gene

Localization for MIR548AD Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548AD Gene

Pathways & Interactions for MIR548AD Gene

PathCards logo

SuperPathways for MIR548AD Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MIR548AD Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR548AD Gene

Drugs & Compounds for MIR548AD Gene

No Compound Related Data Available

Transcripts for MIR548AD Gene

mRNA/cDNA for MIR548AD Gene

3 RNACentral transcripts :
2 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 miRBase transcripts :
6 ENA transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AD Gene

No ASD Table

Relevant External Links for MIR548AD Gene

GeneLoc Exon Structure for
MIR548AD

Expression for MIR548AD Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR548AD Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR548AD

genes like me logo Genes that share expression patterns with MIR548AD: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AD Gene

Orthologs for MIR548AD Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 98 (a)
OneToOne
Species where no ortholog for MIR548AD was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AD Gene

ENSEMBL:
Gene Tree for MIR548AD (if available)
TreeFam:
Gene Tree for MIR548AD (if available)

Paralogs for MIR548AD Gene

No data available for Paralogs for MIR548AD Gene

Variants for MIR548AD Gene

Additional dbSNP identifiers (rs#s) for MIR548AD Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR548AD Gene

Variant ID Type Subtype PubMed ID
esv3575225 CNV gain 25503493
nsv1008651 CNV loss 25217958
nsv1010722 CNV gain 25217958
nsv1014577 CNV loss 25217958
nsv519522 CNV gain 19592680
nsv581402 CNV loss 21841781

Additional Variant Information for MIR548AD Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR548AD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR548AD Gene

Disorders for MIR548AD Gene

Additional Disease Information for MIR548AD

No disorders were found for MIR548AD Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AD Gene

Publications for MIR548AD Gene

  1. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen TB … Bramsen JB (RNA biology 2011) 3 54
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima DD … Hematologic Malignancies Research Consortium (Blood 2010) 3 54
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 54

Products for MIR548AD Gene

Sources for MIR548AD Gene