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Aliases for MIR548A2 Gene

Subcategory (RNA class) for MIR548A2 Gene


Quality Score for this RNA gene is


Aliases for MIR548A2 Gene

  • MicroRNA 548a-2 2 3 5
  • Hsa-Mir-548a-2 3
  • MIRN548A2 3

External Ids for MIR548A2 Gene

ORGUL Members for MIR548A2 Gene

Previous HGNC Symbols for MIR548A2 Gene

  • MIRN548A2

Previous GeneCards Identifiers for MIR548A2 Gene

  • GC06P135602
  • GC06P135560

Summaries for MIR548A2 Gene

Entrez Gene Summary for MIR548A2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548A2 Gene

MIR548A2 (MicroRNA 548a-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548A2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548A2 Gene

Genomics for MIR548A2 Gene

GeneHancer (GH) Regulatory Elements for MIR548A2 Gene

Promoters and enhancers for MIR548A2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I135238 Enhancer 0.4 dbSUPER 550.8 +0.7 720 3.1 ZNF687 GATA3 ZBTB33 MIR548A2 GC06P135240 MYB-AS1 MYB ENSG00000234084 AHI1 ENSG00000224374
GH06I135319 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +83.6 83639 7.3 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT IRF4 ZNF766 E2F8 ZNF207 JUNB AHI1 BCLAF1 ENSG00000224374 MIR548A2 MYB BTRCP1 ENSG00000234084
GH06I135265 Enhancer 1 Ensembl ENCODE dbSUPER 11.8 +30.2 30207 6.8 USF1 RFX1 CEBPG FOXA1 SP1 ATF4 POLR2A NFATC1 POU5F1 FOS AHI1 ENSG00000234084 MIR548A2 MYB-AS1 MYB GC06P135267
GH06I135212 Enhancer 0.8 Ensembl dbSUPER 11.9 -26.3 -26312 0.7 SMARCE1 MEIS2 PKNOX1 DPF2 FOXA1 PRDM6 GATA3 FOS MIR548A2 ENSG00000224374 GC06P135201 LOC105378011 MYB
GH06I135214 Enhancer 0.4 dbSUPER 11.9 -23.7 -23729 1.8 POLR2A SCRT2 SUPT5H MYB MIR548A2 ENSG00000224374 GC06P135201 LOC105378011
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR548A2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548A2 Gene

Genomic Locations for MIR548A2 Gene
97 bases
Plus strand

Genomic View for MIR548A2 Gene

Genes around MIR548A2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548A2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548A2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548A2 Gene

Proteins for MIR548A2 Gene

Post-translational modifications for MIR548A2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548A2 Gene

Domains & Families for MIR548A2 Gene

Gene Families for MIR548A2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548A2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548A2 Gene

Function for MIR548A2 Gene

Phenotypes From GWAS Catalog for MIR548A2 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548A2 Gene

Localization for MIR548A2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548A2 Gene

Pathways & Interactions for MIR548A2 Gene

SuperPathways for MIR548A2 Gene

No Data Available

Interacting Proteins for MIR548A2 Gene

Gene Ontology (GO) - Biological Process for MIR548A2 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548A2 Gene

Drugs & Compounds for MIR548A2 Gene

No Compound Related Data Available

Transcripts for MIR548A2 Gene

mRNA/cDNA for MIR548A2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548A2 Gene

No ASD Table

Relevant External Links for MIR548A2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548A2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548A2 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548A2 Gene:

genes like me logo Genes that share expression patterns with MIR548A2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548A2 Gene

Orthologs for MIR548A2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548A2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-548a-2 34
  • 97 (a)
Species where no ortholog for MIR548A2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548A2 Gene

Gene Tree for MIR548A2 (if available)
Gene Tree for MIR548A2 (if available)

Paralogs for MIR548A2 Gene

No data available for Paralogs for MIR548A2 Gene

Variants for MIR548A2 Gene

Sequence variations from dbSNP and Humsavar for MIR548A2 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000436708 -- 135,239,630(+) T/G downstream_transcript_variant
rs1005181272 -- 135,238,024(+) C/T upstream_transcript_variant
rs1005668399 -- 135,237,166(+) G/T upstream_transcript_variant
rs1006782207 -- 135,237,306(+) G/T upstream_transcript_variant
rs1007275229 -- 135,238,585(+) T/G upstream_transcript_variant

Additional Variant Information for MIR548A2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR548A2 Gene

Disorders for MIR548A2 Gene

Additional Disease Information for MIR548A2

No disorders were found for MIR548A2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548A2 Gene

Publications for MIR548A2 Gene

  1. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein JI … Sullivan PF (Nature communications 2014) 3 58
  2. White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder. (PMID: 23218918) Sprooten E … McIntosh AM (Psychiatry research 2013) 3 58
  3. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P … Tuschl T (Cell 2007) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
  5. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 3 58

Products for MIR548A2 Gene

Sources for MIR548A2 Gene

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