Aliases for MIR548A1HG Gene

Subcategory (RNA class) for MIR548A1HG Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MIR548A1HG Gene

  • MIR548A1 Host Gene 2 3 5
  • MIR548A1HG 2 168
  • HSALNG0048409 167
  • NONHSAG043116 92

External Ids for MIR548A1HG Gene

Summaries for MIR548A1HG Gene

GeneCards Summary for MIR548A1HG Gene

MIR548A1HG (MIR548A1 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MIR548A1HG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR548A1HG Gene

Genomics for MIR548A1HG Gene

GeneHancer (GH) Regulatory Elements for MIR548A1HG Gene

Promoters and enhancers for MIR548A1HG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J018536 Enhancer 0.9 VISTA UCNEbase 0.4 +14.5 14482 1.6 HNF4A RXRA EZH2 MIR548A1HG piR-32214-573 RF00100-125
GH06J018527 Enhancer 0.5 Ensembl 0.4 +5.6 5566 1 ZNF217 CTCF CTBP1 SMC3 GATA3 ZNF654 RAD21 SMARCA4 ZNF384 DEK MIR548A1HG piR-32214-573 RF00100-125
GH06J018584 Enhancer 1.1 Ensembl ENCODE 0.2 +62.8 62765 1.8 ZBTB40 RBAK JUND FOS ZNF639 ZIC2 REST ZBTB10 ZBTB11 ZNF623 NUP153 DEK MIR548A1 piR-57133-509 MIR548A1HG
GH06J018515 Enhancer 0.3 Ensembl 0.4 -6.7 -6734 0.8 ESR1 SCRT2 RNU6-263P MIR548A1HG piR-38051-236 LOC105374955
GH06J018545 Enhancer 0.4 Ensembl 0.4 +23.2 23166 1 FOS TBX21 JUN MTA2 MIR548A1 DEK MIR548A1HG piR-32214-573 RF00100-125
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR548A1HG on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548A1HG Gene

Genomic Locations for MIR548A1HG Gene
chr6:18,522,735-18,723,964
(GRCh38/hg38)
Size:
201,230 bases
Orientation:
Plus strand

Genomic View for MIR548A1HG Gene

Genes around MIR548A1HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548A1HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548A1HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548A1HG Gene

Proteins for MIR548A1HG Gene

Post-translational modifications for MIR548A1HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548A1HG Gene

Domains & Families for MIR548A1HG Gene

Gene Families for MIR548A1HG Gene

genes like me logo Genes that share domains with MIR548A1HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR548A1HG Gene

Function for MIR548A1HG Gene

Phenotypes From GWAS Catalog for MIR548A1HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548A1HG Gene

Localization for MIR548A1HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548A1HG Gene

Pathways & Interactions for MIR548A1HG Gene

PathCards logo

SuperPathways for MIR548A1HG Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MIR548A1HG Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR548A1HG Gene

Drugs & Compounds for MIR548A1HG Gene

No Compound Related Data Available

Transcripts for MIR548A1HG Gene

mRNA/cDNA for MIR548A1HG Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
4 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548A1HG Gene

No ASD Table

Relevant External Links for MIR548A1HG Gene

GeneLoc Exon Structure for
MIR548A1HG

Expression for MIR548A1HG Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548A1HG Gene

Orthologs for MIR548A1HG Gene

Evolution for MIR548A1HG Gene

ENSEMBL:
Gene Tree for MIR548A1HG (if available)
TreeFam:
Gene Tree for MIR548A1HG (if available)

No data available for Orthologs for MIR548A1HG Gene

Paralogs for MIR548A1HG Gene

No data available for Paralogs for MIR548A1HG Gene

Variants for MIR548A1HG Gene

Additional dbSNP identifiers (rs#s) for MIR548A1HG Gene

Additional Variant Information for MIR548A1HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR548A1HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR548A1HG Gene

Disorders for MIR548A1HG Gene

Additional Disease Information for MIR548A1HG

No disorders were found for MIR548A1HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548A1HG Gene

Publications for MIR548A1HG Gene

No publications were found for MIR548A1HG Gene.

No data available for Mastermind for MIR548A1HG Gene

Products for MIR548A1HG Gene

Sources for MIR548A1HG Gene