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Aliases for MIR520D Gene

Subcategory (RNA class) for MIR520D Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR520D Gene

  • MicroRNA 520d 2 3 5
  • Hsa-Mir-520d 3
  • MIRN520D 3

External Ids for MIR520D Gene

ORGUL Members for MIR520D Gene

Previous HGNC Symbols for MIR520D Gene

  • MIRN520D

Previous GeneCards Identifiers for MIR520D Gene

  • GC19P058944
  • GC19P059007
  • GC19P054228
  • GC19P054236
  • GC19P054272
  • GC19P054321
  • GC19P054342
  • GC19P054413
  • GC19P054488

Summaries for MIR520D Gene

Entrez Gene Summary for MIR520D Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR520D Gene

MIR520D (MicroRNA 520d) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR520D Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR520D Gene

Genomics for MIR520D Gene

GeneHancer (GH) Regulatory Elements for MIR520D Gene

Promoters and enhancers for MIR520D Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I053840 Enhancer 1.1 Ensembl ENCODE 10.5 +122.0 122033 2.7 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF143 FOS ATF7 SP3 REST LOC105372457 ENSG00000232220 PRKCG CACNG6 MIR935 MIR1283-1 MIR520A MIR515-2 MIR519C MIR515-1
GH19I053659 Enhancer 0.9 ENCODE dbSUPER 11.1 -58.8 -58821 2.7 ELF3 SOX13 FOXA2 SAP130 NR2F6 CREM GATAD2A SOX5 SP5 PPARG MIR515-2 MIR1283-1 MIR519C MIR520A MIR519B MIR526B MIR518F MIR520B MIR525 MIR518B
GH19I053611 Enhancer 0.9 ENCODE dbSUPER 10.8 -107.1 -107131 3.1 SOX13 ESRRA USF1 FOXA2 NEUROD1 TEAD3 CTBP1 GATA3 POLR2A NR2F6 MIR520A RNU6-698P MIR519B MIR525 MIR526B MIR518B MIR518F MIR520B MIR520C MIR526A1
GH19I053898 Enhancer 0.9 Ensembl ENCODE 10.6 +178.7 178746 1.3 KLF1 PKNOX1 BACH1 ZNF335 POLR2A PATZ1 PRDM10 KLF8 KLF13 SP3 LOC105372457 ENSG00000232324 MYADM MIR935 CACNG6 MIR520A RNU6-1041P MIR516A2 MIR519A1 RNU6-751P
GH19I053844 Enhancer 0.9 FANTOM5 Ensembl ENCODE 10.5 +125.0 124998 0.6 ZNF121 HLF CEBPB CEBPG ATF2 LOC105372457 ENSG00000232220 PRKCG MIR935 CACNG6 MIR520A MIR1283-1 MIR519C MIR515-1 MIR519E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR520D on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR520D Gene

Genomic Locations for MIR520D Gene
chr19:53,720,096-53,720,182
(GRCh38/hg38)
Size:
87 bases
Orientation:
Plus strand
chr19:54,223,350-54,223,436
(GRCh37/hg19)

Genomic View for MIR520D Gene

Genes around MIR520D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR520D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR520D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR520D Gene

Proteins for MIR520D Gene

Post-translational modifications for MIR520D Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR520D Gene

Domains & Families for MIR520D Gene

Gene Families for MIR520D Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR520D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR520D Gene

Function for MIR520D Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR520D Gene

Localization for MIR520D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR520D Gene

Pathways & Interactions for MIR520D Gene

SuperPathways for MIR520D Gene

No Data Available

Interacting Proteins for MIR520D Gene

Gene Ontology (GO) - Biological Process for MIR520D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR520D Gene

Drugs & Compounds for MIR520D Gene

No Compound Related Data Available

Transcripts for MIR520D Gene

mRNA/cDNA for MIR520D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR520D Gene

No ASD Table

Relevant External Links for MIR520D Gene

GeneLoc Exon Structure for
MIR520D
ECgene alternative splicing isoforms for
MIR520D

Expression for MIR520D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR520D Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR520D Gene:

MIR520D
genes like me logo Genes that share expression patterns with MIR520D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR520D Gene

Orthologs for MIR520D Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR520D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-520d 34
  • 99 (a)
OneToOne
Species where no ortholog for MIR520D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR520D Gene

ENSEMBL:
Gene Tree for MIR520D (if available)
TreeFam:
Gene Tree for MIR520D (if available)

Paralogs for MIR520D Gene

No data available for Paralogs for MIR520D Gene

Variants for MIR520D Gene

Sequence variations from dbSNP and Humsavar for MIR520D Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000487176 -- 53,719,137(+) T/G upstream_transcript_variant
rs1000706018 -- 53,718,940(+) G/A upstream_transcript_variant
rs1003178059 -- 53,719,797(+) A/C/G/T upstream_transcript_variant
rs1004131479 -- 53,719,369(+) G/A upstream_transcript_variant
rs1004421066 -- 53,719,114(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR520D Gene

Variant ID Type Subtype PubMed ID
esv2718812 CNV deletion 23290073
esv2718833 CNV deletion 23290073
esv2718837 CNV deletion 23290073
esv2762049 CNV gain 21179565
nsv458781 CNV gain 19166990
nsv580108 CNV gain 21841781
nsv961246 CNV duplication 23825009

Additional Variant Information for MIR520D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR520D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR520D Gene

Disorders for MIR520D Gene

Additional Disease Information for MIR520D

No disorders were found for MIR520D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR520D Gene

Publications for MIR520D Gene

  1. Hsa-miR-520d induces hepatoma cells to form normal liver tissues via a stemness-mediated process. (PMID: 24458129) Tsuno S … Miura N (Scientific reports 2014) 3 58
  2. MicroRNA 520d-3p inhibits gastric cancer cell proliferation, migration, and invasion by downregulating EphA2 expression. (PMID: 25063221) Li R … Chen Z (Molecular and cellular biochemistry 2014) 3 58
  3. MiR-520d-5p directly targets TWIST1 and downregulates the metastamiR miR-10b. (PMID: 25426550) Tsukerman P … Mandelboim O (Oncotarget 2014) 3 58
  4. Comparison of inflammatory microRNA expression in healthy and periodontitis tissues. (PMID: 22128589) Lee YH … Chung J (Biocell : official journal of the Sociedades Latinoamericanas de Microscopia Electronica ... et. al 2011) 3 58
  5. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P … Tuschl T (Cell 2007) 3 58

Products for MIR520D Gene

Sources for MIR520D Gene

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