MIR518A1 Gene (RNA Gene)

MicroRNA 518a-1

GC19P055572
GIFtS:
16
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR518A1 Gene

Data sources for MIR518A1 Gene:

Subcategory (RNA class) for MIR518A1 Gene

miRNA

Aliases for MIR518A1 Gene

External Ids for MIR518A1 Gene

Previous HGNC Symbols for MIR518A1 Gene

  • MIRN518A-1
  • MIRN518A1

Previous GeneCards Identifiers for MIR518A1 Gene

  • GC19P058969
  • GC19P059013
  • GC19P054234
  • GC19P053732
  • GC19P053765
  • GC19P053988
  • GC19P054019
  • GC19P054043
  • GC19P054110
  • GC19P053796
  • GC19P053827
  • GC19P053850
  • GC19P053858
  • GC19P053880
  • GC19P053905
  • GC19P053931
  • GC19P053959
  • GC19P054627

Summaries for MIR518A1 Gene

Entrez Gene Summary for MIR518A1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR518A1 Gene

MIR518A1 (MicroRNA 518a-1) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR518A1 include Malignant Conjunctival Melanoma and Conjunctival Cancer.

Rfam classification for MIR518A1 Gene

Additional gene information for MIR518A1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR518A1 Gene

Genomics for MIR518A1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR518A1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR518A1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR518A1 Gene

Latest Assembly
chr19:53,731,006-53,731,090
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand

Previous Assembly
chr19:54,234,260-54,234,344
(GRCh37/hg19 by Entrez Gene)
Size:
85 bases
Orientation:
Plus strand

chr19:54,234,260-54,234,344
(GRCh37/hg19 by Ensembl)
Size:
85 bases
Orientation:
Plus strand

Genomic View for MIR518A1 Gene

Genes around MIR518A1 on UCSC Golden Path with GeneCards custom track
MIR518A1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR518A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR518A1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR518A1 Gene

Proteins for MIR518A1 Gene

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  2. Protein products for research
  3. Assay products for research

Post-translational modifications for MIR518A1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR518A1 Gene

Domains & Families for MIR518A1 Gene

Gene Families for MIR518A1 Gene

HGNC:
genes like me logo Genes that share domains with MIR518A1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR518A1 Gene

Function for MIR518A1 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Gene Ontology (GO) - Molecular Function for MIR518A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 20829195
genes like me logo Genes that share ontologies with MIR518A1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR518A1 Gene

Localization for MIR518A1 Gene

Gene Ontology (GO) - Cellular Components for MIR518A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with MIR518A1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR518A1 Gene

Pathways & Interactions for MIR518A1 Gene

PathCards logo

SuperPathways for MIR518A1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR518A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0035195 gene silencing by miRNA IDA,IEA --
genes like me logo Genes that share ontologies with MIR518A1: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR518A1 Gene

Drugs & Compounds for MIR518A1 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for MIR518A1 Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
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Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR518A1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000724CB9_9606 precursor_RNA 85 5

RefSeq: NR_030210,

Ensembl: ENST00000385068 (view in UCSC) ,

miRBase: MI0003170,

Rfam: RF00639,

ENA: LM609488.1:1..85:precursor_RNA,

URS0000024ACC_9606 miRNA 22 5

RefSeq: NR_030210, NR_030213,

LncBase: hsa-miR-518a-3p,

miRBase: MIMAT0002863,

TarBase: hsa-miR-518a-3p,

ENA: LM379792.1:1..22:ncRNA, LM609488.1:51..72:ncRNA, LM609490.1:53..74:ncRNA,

URS0000068BEA_9606 miRNA 20 5

RefSeq: NR_030210, NR_030213, NR_030219,

LncBase: hsa-miR-518a-5p, hsa-miR-527,

miRBase: MIMAT0005457,

TarBase: hsa-miR-518a-5p, hsa-miR-527,

ENA: LM609488.1:14..33:ncRNA, LM609490.1:16..35:ncRNA,

URS00001BD821_9606 miRNA 21 2

MirGeneDB: Hsa-Mir-430-P48_5p,

ENA: AY882297.1:1..21:ncRNA,

URS0000EFEC7D_9606 precursor_RNA 61 1

MirGeneDB: Hsa-Mir-430-P18,

MIR518A1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR518A1 Gene

3 NCBI additional mRNA sequence :

CRISPR products for research

Alternative Splicing Database (ASD) splice patterns (SP) for MIR518A1 Gene

No ASD Table

Relevant External Links for MIR518A1 Gene

GeneLoc Exon Structure for
MIR518A1

Expression for MIR518A1 Gene

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  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR518A1 Gene

mRNA expression in normal human tissues for MIR518A1 Gene
mRNA expression by GTEx for MIR518A1 Gene
genes like me logo Genes that share expression patterns with MIR518A1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR518A1 Gene

Orthologs for MIR518A1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR518A1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia -- 31
  • 87 (a)
 OneToOne
Species where no ortholog for MIR518A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for MIR518A1 Gene

ENSEMBL:
Gene Tree for MIR518A1 (if available)
TreeFam:
Gene Tree for MIR518A1 (if available)

Paralogs for MIR518A1 Gene

No data available for Paralogs for MIR518A1 Gene

Variants for MIR518A1 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR518A1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR518A1 Gene

Variant ID Type Subtype PubMed ID
esv2448351 CNV deletion 19546169
esv2718812 CNV deletion 23290073
esv2718833 CNV deletion 23290073
esv2718837 CNV deletion 23290073
nsv458781 CNV gain 19166990
nsv580108 CNV gain 21841781
nsv961246 CNV duplication 23825009

Additional Variant Information for MIR518A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR518A1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR518A1 Gene

Disorders for MIR518A1 Gene

MalaCards: The human disease database

(17) MalaCards diseases for MIR518A1 Gene - From: COP and GCD

Disorder Aliases PubMed IDs
malignant conjunctival melanoma
  • conjunctival melanoma
conjunctival cancer
  • conjunctival tumor
conjunctival disease
  • conjunctival diseases
gastrointestinal system cancer
  • digestive system cancer
pancreatic cystadenocarcinoma
  • cystadenocarcinoma of pancreas
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR518A1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with MIR518A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR518A1 Gene

Publications for MIR518A1 Gene

  1. Enhancement of CCL2 expression and monocyte migration by CCN1 in osteoblasts through inhibiting miR-518a-5p: implication of rheumatoid arthritis therapy. (PMID: 28341837) Chen CY … Tang CH (Scientific reports 2017) 3
  2. PIK3C2A is a gene-specific target of microRNA-518a-5p in imatinib mesylate-resistant gastrointestinal stromal tumor. (PMID: 26950487) Shi Y … Hou Y (Laboratory investigation; a journal of technical methods and pathology 2016) 3
  3. Chemokine receptor CCR6 expression is regulated by miR-518a-5p in colorectal cancer cells. (PMID: 24559209) Rubie C … Glanemann M (Journal of translational medicine 2014) 3
  4. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3
  5. A microRNA screen to identify modulators of sensitivity to BCL2 inhibitor ABT-263 (navitoclax). (PMID: 20829195) Lam LT … Semizarov D (Molecular cancer therapeutics 2010) 3

ExternalLinks

View latest publications for MIR518A1 gene in Mastermind

Products for MIR518A1 Gene

Sources for MIR518A1 Gene