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Aliases for MIR5100 Gene

Subcategory (RNA class) for MIR5100 Gene


Quality Score for this RNA gene is


Aliases for MIR5100 Gene

  • MicroRNA 5100 2 3 5
  • Hsa-Mir-5100 3

External Ids for MIR5100 Gene

Previous GeneCards Identifiers for MIR5100 Gene

  • GC10U901583
  • GC10P043495

Summaries for MIR5100 Gene

Entrez Gene Summary for MIR5100 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5100 Gene

MIR5100 (MicroRNA 5100) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5100 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5100 Gene

Genomics for MIR5100 Gene

GeneHancer (GH) Regulatory Elements for MIR5100 Gene

Promoters and enhancers for MIR5100 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I043025 Enhancer 0.9 Ensembl ENCODE 0.3 +28.9 28887 1.1 NCOA3 ESRRA NFIB MAX NFXL1 E2F1 CTBP1 GATA3 POLR2A FOS MIR5100 GC10M043057
GH10I043011 Enhancer 0.4 ENCODE 0.4 +15.0 14998 2 SP1 GATA3 POU5F1 ZNF33B LINC00839 MIR5100 GC10M043057
GH10I043056 Enhancer 0.6 VISTA 0.2 +59.9 59879 2 RCOR1 CHD2 CSGALNACT2 RET GC10M043057 MIR5100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5100 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5100 Gene

Genomic Locations for MIR5100 Gene
119 bases
Plus strand

Genomic View for MIR5100 Gene

Genes around MIR5100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5100 Gene

Proteins for MIR5100 Gene

Post-translational modifications for MIR5100 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5100 Gene

Domains & Families for MIR5100 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5100 Gene

Function for MIR5100 Gene

Phenotypes From GWAS Catalog for MIR5100 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5100 Gene

Localization for MIR5100 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5100 Gene

Pathways & Interactions for MIR5100 Gene

SuperPathways for MIR5100 Gene

No Data Available

Interacting Proteins for MIR5100 Gene

Gene Ontology (GO) - Biological Process for MIR5100 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5100 Gene

Drugs & Compounds for MIR5100 Gene

No Compound Related Data Available

Transcripts for MIR5100 Gene

mRNA/cDNA for MIR5100 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5100 Gene

No ASD Table

Relevant External Links for MIR5100 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5100 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5100 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5100 Gene:

genes like me logo Genes that share expression patterns with MIR5100: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5100 Gene

Orthologs for MIR5100 Gene

Evolution for MIR5100 Gene

Gene Tree for MIR5100 (if available)
Gene Tree for MIR5100 (if available)

No data available for Orthologs for MIR5100 Gene

Paralogs for MIR5100 Gene

No data available for Paralogs for MIR5100 Gene

Variants for MIR5100 Gene

Sequence variations from dbSNP and Humsavar for MIR5100 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000240530 -- 42,997,447(+) G/C upstream_transcript_variant
rs1000311092 -- 42,997,128(+) G/A upstream_transcript_variant
rs1000976626 -- 42,997,316(+) G/A upstream_transcript_variant
rs1000994916 -- 42,996,832(+) A/G upstream_transcript_variant
rs1004712296 -- 42,996,216(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR5100 Gene

Variant ID Type Subtype PubMed ID
nsv550695 CNV gain 21841781
nsv1042764 CNV gain 25217958
nsv1038102 CNV gain 25217958
esv2759746 CNV loss 17122850

Additional Variant Information for MIR5100 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5100 Gene

Disorders for MIR5100 Gene

Additional Disease Information for MIR5100

No disorders were found for MIR5100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5100 Gene

Publications for MIR5100 Gene

  1. Overexpression of microRNA-5100 decreases the aggressive phenotype of pancreatic cancer cells by targeting PODXL. (PMID: 26892887) Chijiiwa Y … Nakamura M (International journal of oncology 2016) 3 58
  2. miR-5100 promotes tumor growth in lung cancer by targeting Rab6. (PMID: 25754817) Huang H … Liu G (Cancer letters 2015) 3 58
  3. Deep sequencing of short RNAs reveals novel microRNAs in minor salivary glands of patients with Sjögren's syndrome. (PMID: 21895886) Tandon M … Alevizos I (Oral diseases 2012) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR5100 Gene

Sources for MIR5100 Gene

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