microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR5047 Gene

Data sources for MIR5047 Gene:

RNA type for MIR5047 Gene

miRNA

Aliases for MIR5047 Gene

External Ids for MIR5047 Gene

Previous GeneCards Identifiers for MIR5047 Gene

  • GC17U901654
  • GC17M062501

Summaries for MIR5047 Gene

Entrez Gene Summary for MIR5047 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5047 Gene

MIR5047 (MicroRNA 5047) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are mRNA Splicing - Major Pathway and Circadian rythm related genes.

Additional gene information for MIR5047 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR5047 Gene

Genomics for MIR5047 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR5047 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J064499 Enhancer 0.5 ENCODE 250.7 +1.3 1305 0.2 ZNF600 POLR2A RBM22 PRDM10 BMI1 BACH1 POLR2B CHD1 HSALNG0118098 HSALNG0118099 MIR3064 MIR5047 MK280245 MK280246 POLG2 DDX5 CEP95
GH17J064501 Enhancer 0.3 ENCODE 250.7 +0.7 725 0.2 SMAD5 POLR2A HSALNG0118099 MIR3064 MIR5047 MK280245 MK280246 LRRC37A3 POLG2 DDX5 CEP95
GH17J064500 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.7 -3749 8.3 LARP7 BCLAF1 SP1 ZNF207 IKZF1 NCOR1 ZNF600 MYC SSRP1 JUND CEP95 POLG2 DDX5 lnc-POLG2-1 DDX42 FTSJ3 SLC16A6P1 ENSG00000265982 PLEKHM1P1 SMARCD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR5047 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR5047 Gene

Latest Assembly
chr17:64,501,214-64,501,313
(GRCh38/hg38)
Size:
100 bases
Orientation:
Minus strand

Previous Assembly
chr17:62,497,332-62,497,431
(GRCh37/hg19 by Entrez Gene)
Size:
100 bases
Orientation:
Minus strand

Genomic View for MIR5047 Gene

Genes around MIR5047 on UCSC Golden Path with GeneCards custom track
MIR5047 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR5047 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5047 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5047 Gene

Proteins for MIR5047 Gene

Post-translational modifications for MIR5047 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5047 Gene

Domains & Families for MIR5047 Gene

Gene Families for MIR5047 Gene

HGNC:
genes like me logo Genes that share domains with MIR5047: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR5047 Gene

Function for MIR5047 Gene

Phenotypes From GWAS Catalog for MIR5047 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5047 Gene

Localization for MIR5047 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5047 Gene

Pathways & Interactions for MIR5047 Gene

genes like me logo Genes that share pathways with MIR5047: view

Pathways by source for MIR5047 Gene

Gene Ontology (GO) - Biological Process for MIR5047 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for MIR5047 Gene

Drugs & Compounds for MIR5047 Gene

No Compound Related Data Available

Transcripts for MIR5047 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR5047 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075DBE4_9606 precursor_RNA 100 3

RefSeq: NR_039969,

Ensembl: ENST00000579212 (view in UCSC) ,

miRBase: MI0017932,

URS000075CFDE_9606 miRNA 21 2

RefSeq: NR_039969,

miRBase: MIMAT0020541,

MIR5047 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5047 Gene

No ASD Table

Relevant External Links for MIR5047 Gene

GeneLoc Exon Structure for
MIR5047

No data available for mRNA/cDNA for MIR5047 Gene

Expression for MIR5047 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5047 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR5047

genes like me logo Genes that share expression patterns with MIR5047: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5047 Gene

Orthologs for MIR5047 Gene

Evolution for MIR5047 Gene

ENSEMBL:
Gene Tree for MIR5047 (if available)
TreeFam:
Gene Tree for MIR5047 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR5047

No data available for Orthologs for MIR5047 Gene

Paralogs for MIR5047 Gene

No data available for Paralogs for MIR5047 Gene

Variants for MIR5047 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR5047 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for MIR5047 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5047
Leiden Open Variation Database (LOVD)
MIR5047

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR5047 Gene

Disorders for MIR5047 Gene

Additional Disease Information for MIR5047

No disorders were found for MIR5047 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5047 Gene

Publications for MIR5047 Gene

  1. An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel miRNA. (PMID: 21346006) Moore HC … Fuller-Pace FV (RNA (New York, N.Y.) 2011) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR5047 Gene

Sources for MIR5047 Gene