microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR4742 Gene

Data sources for MIR4742 Gene:

Subcategory (RNA class) for MIR4742 Gene

miRNA

Aliases for MIR4742 Gene

External Ids for MIR4742 Gene

Previous GeneCards Identifiers for MIR4742 Gene

  • GC01U903279
  • GC01M224588

Summaries for MIR4742 Gene

Entrez Gene Summary for MIR4742 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4742 Gene

MIR4742 (MicroRNA 4742) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4742 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR4742 Gene

Genomics for MIR4742 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR4742 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J224379 Enhancer 0.7 ENCODE 0.4 +18.1 18071 2.1 BCL11A TRIM22 CBFB SPI1 BHLHE40 POLR2A MYC IRF5 IKZF1 ATF2 CNIH4 NVL CNIH3 WDR26 HSALNG0010958 MIR4742 HSALNG0010955
GH01J224376 Enhancer 0.8 ENCODE 0.3 +20.9 20856 2.1 ZSCAN16 FEZF1 JUND FOSL1 ZNF2 BATF POLR2A PKNOX1 ZNF362 ZNF384 CNIH4 NVL WDR26 CNIH3 HSALNG0010958 HSALNG0010955 MIR4742
GH01J224391 Enhancer 0.4 Ensembl 0.4 +7.1 7110 0.4 CEBPB ZNF512 YY1 CEBPG CNIH4 MIR4742 lnc-NVL-7 HSALNG0010958 CNIH3 WDR26
GH01J224390 Enhancer 0.3 UCNEbase 0.4 +8.9 8907 0.2 MIR4742 lnc-NVL-7 HSALNG0010958 CNIH4 CNIH3 WDR26
GH01J224389 Enhancer 0.3 UCNEbase 0.4 +8.6 8623 0.3 DEGS1 MIR4742 lnc-NVL-7 HSALNG0010958 CNIH4 CNIH3 WDR26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR4742 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR4742 Gene

Latest Assembly
chr1:224,398,227-224,398,311
(GRCh38/hg38)
Size:
85 bases
Orientation:
Minus strand

Previous Assembly
chr1:224,585,929-224,586,013
(GRCh37/hg19 by Entrez Gene)
Size:
85 bases
Orientation:
Minus strand

chr1:224,585,929-224,586,013
(GRCh37/hg19 by Ensembl)
Size:
85 bases
Orientation:
Minus strand

Genomic View for MIR4742 Gene

Genes around MIR4742 on UCSC Golden Path with GeneCards custom track
MIR4742 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR4742 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4742 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4742 Gene

Proteins for MIR4742 Gene

Post-translational modifications for MIR4742 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4742 Gene

Domains & Families for MIR4742 Gene

Gene Families for MIR4742 Gene

HGNC:
genes like me logo Genes that share domains with MIR4742: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR4742 Gene

Function for MIR4742 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4742 Gene

Localization for MIR4742 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4742 Gene

Pathways & Interactions for MIR4742 Gene

PathCards logo

SuperPathways for MIR4742 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR4742 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR4742 Gene

Drugs & Compounds for MIR4742 Gene

No Compound Related Data Available

Transcripts for MIR4742 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR4742 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000C48FA_9606 miRNA 23 5

RefSeq: NR_039896,

LncBase: hsa-miR-4742-3p,

miRBase: MIMAT0019873,

TarBase: hsa-miR-4742-3p,

ENA: FR773034.1:1..23:ncRNA, LM382571.1:1..23:ncRNA, LM611402.1:63..85:ncRNA,

URS000075DC2B_9606 precursor_RNA 85 4

RefSeq: NR_039896,

Ensembl: ENST00000581069 (view in UCSC) ,

miRBase: MI0017380,

ENA: LM611402.1:1..85:precursor_RNA,

URS0000473E7A_9606 miRNA 23 3

RefSeq: NR_039896,

miRBase: MIMAT0019872,

ENA: FR773035.1:1..23:ncRNA, LM382570.1:1..23:ncRNA, LM611402.1:1..23:ncRNA,

MIR4742 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR4742 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4742 Gene

No ASD Table

Relevant External Links for MIR4742 Gene

GeneLoc Exon Structure for
MIR4742

Expression for MIR4742 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR4742 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR4742

genes like me logo Genes that share expression patterns with MIR4742: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4742 Gene

Orthologs for MIR4742 Gene

Evolution for MIR4742 Gene

ENSEMBL:
Gene Tree for MIR4742 (if available)
TreeFam:
Gene Tree for MIR4742 (if available)

No data available for Orthologs for MIR4742 Gene

Paralogs for MIR4742 Gene

No data available for Paralogs for MIR4742 Gene

Variants for MIR4742 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR4742 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR4742 Gene

Variant ID Type Subtype PubMed ID
nsv160255 CNV deletion 16902084
nsv469889 CNV gain 16826518
nsv8868 CNV loss 18304495

Additional Variant Information for MIR4742 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4742

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR4742 Gene

Disorders for MIR4742 Gene

Additional Disease Information for MIR4742

No disorders were found for MIR4742 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4742 Gene

Publications for MIR4742 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3
  3. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. (PMID: 21807764) Joyce CE … Bowcock AM (Human molecular genetics 2011) 3
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR4742 Gene

Sources for MIR4742 Gene