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Aliases for MIR4672 Gene

Subcategory (RNA class) for MIR4672 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR4672 Gene

  • MicroRNA 4672 2 3 5
  • Hsa-Mir-4672 3

External Ids for MIR4672 Gene

Previous GeneCards Identifiers for MIR4672 Gene

  • GC09U901727
  • GC09M130636

Summaries for MIR4672 Gene

Entrez Gene Summary for MIR4672 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4672 Gene

MIR4672 (MicroRNA 4672) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4672 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4672 Gene

Genomics for MIR4672 Gene

GeneHancer (GH) Regulatory Elements for MIR4672 Gene

Promoters and enhancers for MIR4672 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I127869 Enhancer 1.1 Ensembl ENCODE 550.8 -0.5 -531 1.3 HDAC1 RB1 SREBF2 ARID4B SIN3A RAD21 RARA RFX5 ZNF335 ARID2 MIR4672 ST6GALNAC6 LOC102723566 FPGS ST6GALNAC4 PIP5KL1 PTRH1 TTC16 AK1 ENSG00000257524
GH09I127867 Enhancer 0.6 ENCODE dbSUPER 550.8 +1.6 1634 1.1 CTCF ZBTB33 MIR4672 ST6GALNAC6 LOC102723566 FPGS PTRH1 TTC16 ODF2 AK1 ENG ENSG00000257524
GH09I127864 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.8 +4.1 4072 1.7 HDGF ZNF133 GLI4 ZNF48 ZNF2 ZNF121 POLR2B ZNF766 GATA2 ZNF207 NAIF1 LOC102723566 FPGS GLE1 ST6GALNAC6 RPL12 GOLGA2 ODF2 TTC16 PTRH1
GH09I127873 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.4 -6.5 -6467 5.8 PKNOX1 ARID4B GLIS2 ZNF143 ATF7 SP3 RXRA ZNF592 GLIS1 MYNN AK1 CIZ1 GOLGA2 ZNF79 SLC25A25-AS1 MIR4672 ENSG00000257524
GH09I127860 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.6 7577 3.7 HDGF PKNOX1 SMAD1 MLX ARNT ZNF766 E2F8 ZNF263 REST MEF2D NAIF1 ZNF79 ODF2 GLE1 SNORA65 ST6GALNAC6 LOC102723566 FPGS PTRH1 TTC16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR4672 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR4672 Gene

Genomic Locations for MIR4672 Gene
chr9:127,869,415-127,869,495
(GRCh38/hg38)
Size:
81 bases
Orientation:
Minus strand
chr9:130,631,694-130,631,774
(GRCh37/hg19)

Genomic View for MIR4672 Gene

Genes around MIR4672 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4672 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4672 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4672 Gene

ORGUL Member Location for MIR4672 Gene

ORGUL Member Location for MIR4672 gene

Proteins for MIR4672 Gene

Post-translational modifications for MIR4672 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4672 Gene

Domains & Families for MIR4672 Gene

Gene Families for MIR4672 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4672: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4672 Gene

Function for MIR4672 Gene

Phenotypes From GWAS Catalog for MIR4672 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4672 Gene

Localization for MIR4672 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4672 Gene

Pathways & Interactions for MIR4672 Gene

SuperPathways for MIR4672 Gene

No Data Available

Interacting Proteins for MIR4672 Gene

Gene Ontology (GO) - Biological Process for MIR4672 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4672 Gene

Drugs & Compounds for MIR4672 Gene

No Compound Related Data Available

Transcripts for MIR4672 Gene

mRNA/cDNA for MIR4672 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4672 Gene

No ASD Table

Relevant External Links for MIR4672 Gene

GeneLoc Exon Structure for
MIR4672
ECgene alternative splicing isoforms for
MIR4672

Expression for MIR4672 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR4672 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4672 Gene:

MIR4672
genes like me logo Genes that share expression patterns with MIR4672: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4672 Gene

Orthologs for MIR4672 Gene

Evolution for MIR4672 Gene

ENSEMBL:
Gene Tree for MIR4672 (if available)
TreeFam:
Gene Tree for MIR4672 (if available)

No data available for Orthologs for MIR4672 Gene

Paralogs for MIR4672 Gene

No data available for Paralogs for MIR4672 Gene

Variants for MIR4672 Gene

Sequence variations from dbSNP and Humsavar for MIR4672 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1001476472 -- 127,871,411(-) C/A upstream_transcript_variant
rs1002389587 -- 127,870,568(-) G/A upstream_transcript_variant
rs1002903404 -- 127,870,075(-) CGCC/CGCCGCC upstream_transcript_variant
rs1003708781 -- 127,870,515(-) A/G upstream_transcript_variant
rs1003818734 -- 127,870,303(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4672 Gene

Variant ID Type Subtype PubMed ID
esv3621795 CNV gain 21293372
esv3576708 CNV gain 25503493
esv28616 CNV gain+loss 19812545

Additional Variant Information for MIR4672 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4672

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4672 Gene

Disorders for MIR4672 Gene

Additional Disease Information for MIR4672

No disorders were found for MIR4672 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4672 Gene

Publications for MIR4672 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR4672 Gene

Sources for MIR4672 Gene

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