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Aliases for MIR4471 Gene

Subcategory (RNA class) for MIR4471 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4471 Gene

  • MicroRNA 4471 2 3 5
  • Hsa-Mir-4471 3

External Ids for MIR4471 Gene

Previous GeneCards Identifiers for MIR4471 Gene

  • GC08U901568
  • GC08P101396

Summaries for MIR4471 Gene

Entrez Gene Summary for MIR4471 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4471 Gene

MIR4471 (MicroRNA 4471) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4471 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4471 Gene

Genomics for MIR4471 Gene

GeneHancer (GH) Regulatory Elements for MIR4471 Gene

Promoters and enhancers for MIR4471 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I100381 Enhancer 0.8 ENCODE 550.8 0.0 -43 1.6 ELF3 CBX3 FOXA2 ARID4B BATF RARA ATF7 ETV6 RUNX3 SMARCA5 MIR4471 ENSG00000253217 RNF19A ENSG00000253666 ENSG00000202310 SPAG1 ENSG00000253824
GH08I100385 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.8 +3.5 3538 2.6 ELF3 FOXA2 BMI1 BATF KLF5 RAD21 ZNF48 RARA ETS1 SLC30A9 RNF19A ENSG00000253217 ENSG00000253666 SPAG1 MIR4471 ENSG00000253824
GH08I100408 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.3 +27.8 27790 3.3 PKNOX1 ATF1 FOXA2 NCOA2 TCF12 ZNF766 GATA2 ATF7 RUNX3 PPARG RNF19A ENSG00000253217 ENSG00000253666 ENSG00000253824 MIR4471
GH08I100394 Enhancer 1 Ensembl ENCODE 0.4 +13.2 13217 2.4 PKNOX1 NFIB NEUROD1 TCF12 FOS CREM CEBPB ELF1 ZNF592 ZNF217 SPAG1 RNF19A ENSG00000253217 ENSG00000253666 ENSG00000202310 MIR4471 ENSG00000253824
GH08I100375 Enhancer 0.8 Ensembl ENCODE 0.4 -6.6 -6627 2 JUN CBFA2T3 EBF1 ZNF316 IKZF1 FOS TRIM24 NFE2 IKZF2 ENSG00000253217 RNF19A SPAG1 MIR4471
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR4471 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR4471 Gene

Genomic Locations for MIR4471 Gene
chr8:100,382,763-100,382,845
(GRCh38/hg38)
Size:
83 bases
Orientation:
Plus strand
chr8:101,394,991-101,395,073
(GRCh37/hg19)

Genomic View for MIR4471 Gene

Genes around MIR4471 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4471 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4471 Gene

Proteins for MIR4471 Gene

Post-translational modifications for MIR4471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4471 Gene

Domains & Families for MIR4471 Gene

Gene Families for MIR4471 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4471: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4471 Gene

Function for MIR4471 Gene

Phenotypes From GWAS Catalog for MIR4471 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4471 Gene

Localization for MIR4471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4471 Gene

Pathways & Interactions for MIR4471 Gene

SuperPathways for MIR4471 Gene

No Data Available

Interacting Proteins for MIR4471 Gene

Gene Ontology (GO) - Biological Process for MIR4471 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4471 Gene

Drugs & Compounds for MIR4471 Gene

No Compound Related Data Available

Transcripts for MIR4471 Gene

mRNA/cDNA for MIR4471 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4471 Gene

No ASD Table

Relevant External Links for MIR4471 Gene

GeneLoc Exon Structure for
MIR4471
ECgene alternative splicing isoforms for
MIR4471

Expression for MIR4471 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4471 Gene:

MIR4471
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4471 Gene

Orthologs for MIR4471 Gene

Evolution for MIR4471 Gene

ENSEMBL:
Gene Tree for MIR4471 (if available)
TreeFam:
Gene Tree for MIR4471 (if available)

No data available for Orthologs for MIR4471 Gene

Paralogs for MIR4471 Gene

No data available for Paralogs for MIR4471 Gene

Variants for MIR4471 Gene

Sequence variations from dbSNP and Humsavar for MIR4471 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1001152704 -- 100,382,453(+) T/A upstream_transcript_variant
rs1002201230 -- 100,382,548(+) T/C upstream_transcript_variant
rs1002319127 -- 100,382,796(+) C/T non_coding_transcript_variant
rs1002897379 -- 100,382,257(+) A/G upstream_transcript_variant
rs1005089539 -- 100,381,591(+) A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4471 Gene

Variant ID Type Subtype PubMed ID
esv2761451 CNV gain 21179565

Additional Variant Information for MIR4471 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4471

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4471 Gene

Disorders for MIR4471 Gene

Additional Disease Information for MIR4471

No disorders were found for MIR4471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4471 Gene

Publications for MIR4471 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima DD … Hematologic Malignancies Research Consortium (Blood 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR4471 Gene

Sources for MIR4471 Gene

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