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Aliases for MIR4280 Gene

Subcategory (RNA class) for MIR4280 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR4280 Gene

  • MicroRNA 4280 2 3 5
  • Hsa-Mir-4280 3

External Ids for MIR4280 Gene

Previous GeneCards Identifiers for MIR4280 Gene

  • GC05U901424
  • GC05M086410

Summaries for MIR4280 Gene

Entrez Gene Summary for MIR4280 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4280 Gene

MIR4280 (MicroRNA 4280) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4280 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4280 Gene

Genomics for MIR4280 Gene

GeneHancer (GH) Regulatory Elements for MIR4280 Gene

Promoters and enhancers for MIR4280 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I087113 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 +0.8 797 2 SMARCE1 JUND RFX1 POLR2A GTF2E2 ID3 FOS RUNX3 MIR4280 RN7SKP34 GC05P087088 LOC101929380
GH05I087117 Enhancer 0.9 ENCODE dbSUPER 550.8 -1.2 -1195 0.1 LEF1 TEAD4 TAL1 CCNT2 TCF12 NCOR1 CBFA2T2 TRIM24 GATAD2A SMARCE1 MIR4280 GC05M087119 GC05P087088 LOC101929380
GH05I087103 Enhancer 0.5 dbSUPER 0.4 +11.0 10995 1.9 POLR2A BCLAF1 MAFK EMSY RELA RN7SKP34 LINC01949 MIR4280 GC05P087088 LOC101929380
GH05I087106 Enhancer 0.2 dbSUPER 0.4 +8.2 8200 0.7 RN7SKP34 MIR4280 GC05P087088 LOC101929380
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR4280 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR4280 Gene

Genomic Locations for MIR4280 Gene
chr5:87,114,879-87,114,954
(GRCh38/hg38)
Size:
76 bases
Orientation:
Minus strand
chr5:86,410,696-86,410,771
(GRCh37/hg19)

Genomic View for MIR4280 Gene

Genes around MIR4280 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4280 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4280 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4280 Gene

ORGUL Member Location for MIR4280 Gene

ORGUL Member Location for MIR4280 gene

Proteins for MIR4280 Gene

Post-translational modifications for MIR4280 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4280 Gene

Domains & Families for MIR4280 Gene

Gene Families for MIR4280 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4280: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4280 Gene

Function for MIR4280 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4280 Gene

Localization for MIR4280 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4280 Gene

Pathways & Interactions for MIR4280 Gene

SuperPathways for MIR4280 Gene

No Data Available

Interacting Proteins for MIR4280 Gene

Gene Ontology (GO) - Biological Process for MIR4280 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4280 Gene

Drugs & Compounds for MIR4280 Gene

No Compound Related Data Available

Transcripts for MIR4280 Gene

mRNA/cDNA for MIR4280 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4280 Gene

No ASD Table

Relevant External Links for MIR4280 Gene

GeneLoc Exon Structure for
MIR4280
ECgene alternative splicing isoforms for
MIR4280

Expression for MIR4280 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4280 Gene:

MIR4280
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4280 Gene

Orthologs for MIR4280 Gene

Evolution for MIR4280 Gene

ENSEMBL:
Gene Tree for MIR4280 (if available)
TreeFam:
Gene Tree for MIR4280 (if available)

No data available for Orthologs for MIR4280 Gene

Paralogs for MIR4280 Gene

No data available for Paralogs for MIR4280 Gene

Variants for MIR4280 Gene

Sequence variations from dbSNP and Humsavar for MIR4280 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000467299 -- 87,116,838(-) G/A upstream_transcript_variant
rs1000788440 -- 87,116,388(-) A/G upstream_transcript_variant
rs1001601077 -- 87,116,087(-) T/C upstream_transcript_variant
rs1001911561 -- 87,115,818(-) T/G upstream_transcript_variant
rs1002634987 -- 87,114,914(-) A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4280 Gene

Variant ID Type Subtype PubMed ID
esv3890667 CNV gain 25118596

Additional Variant Information for MIR4280 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4280

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4280 Gene

Disorders for MIR4280 Gene

Additional Disease Information for MIR4280

No disorders were found for MIR4280 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4280 Gene

Publications for MIR4280 Gene

  1. Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors. (PMID: 19784364) Goff LA … Hart RP (PloS one 2009) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR4280 Gene

Sources for MIR4280 Gene

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