Aliases for MIR3936HG Gene

Subcategory (RNA class) for MIR3936HG Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MIR3936HG Gene

  • MIR3936 Host Gene 2 3 5
  • SLC22A5 And SLC22A4 Antisense RNA 1 2 3
  • MIR3936HG 2 168
  • NONHSAG041519 92
  • HSALNG0044828 167
  • SLC22A5-AS1 3

External Ids for MIR3936HG Gene

Summaries for MIR3936HG Gene

GeneCards Summary for MIR3936HG Gene

MIR3936HG (MIR3936 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MIR3936HG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3936HG Gene

Genomics for MIR3936HG Gene

GeneHancer (GH) Regulatory Elements for MIR3936HG Gene

Promoters and enhancers for MIR3936HG Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3936HG on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3936HG Gene

Genomic Locations for MIR3936HG Gene
chr5:132,311,275-132,376,935
(GRCh38/hg38)
Size:
65,661 bases
Orientation:
Minus strand
chr5:131,646,969-131,705,608
(GRCh37/hg19)
Size:
58,640 bases
Orientation:
Minus strand

Genomic View for MIR3936HG Gene

Genes around MIR3936HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3936HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3936HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3936HG Gene

Proteins for MIR3936HG Gene

Post-translational modifications for MIR3936HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3936HG Gene

Domains & Families for MIR3936HG Gene

Gene Families for MIR3936HG Gene

genes like me logo Genes that share domains with MIR3936HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3936HG Gene

Function for MIR3936HG Gene

Phenotypes From GWAS Catalog for MIR3936HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3936HG Gene

Localization for MIR3936HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3936HG Gene

Pathways & Interactions for MIR3936HG Gene

PathCards logo

SuperPathways for MIR3936HG Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MIR3936HG Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3936HG Gene

Drugs & Compounds for MIR3936HG Gene

No Compound Related Data Available

Transcripts for MIR3936HG Gene

mRNA/cDNA for MIR3936HG Gene

17 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
4 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3936HG Gene

No ASD Table

Relevant External Links for MIR3936HG Gene

GeneLoc Exon Structure for
MIR3936HG

Expression for MIR3936HG Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR3936HG

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3936HG Gene

Orthologs for MIR3936HG Gene

Evolution for MIR3936HG Gene

ENSEMBL:
Gene Tree for MIR3936HG (if available)
TreeFam:
Gene Tree for MIR3936HG (if available)

No data available for Orthologs for MIR3936HG Gene

Paralogs for MIR3936HG Gene

No data available for Paralogs for MIR3936HG Gene

Variants for MIR3936HG Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MIR3936HG Gene

SNP ID Clinical significance and condition Chr 05 pos Variation AA Info Type
713910 Benign: not provided 132,335,906(-) G/A SYNONYMOUS_VARIANT
733605 Benign: not provided 132,340,620(-) T/C SYNONYMOUS_VARIANT
785802 Benign: not provided 132,312,232(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
805281 Benign: not provided 132,335,969(-) C/G SYNONYMOUS_VARIANT
rs1050152 Benign: SLC22A4 POLYMORPHISM 132,340,627(-) C/T MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for MIR3936HG Gene

Additional Variant Information for MIR3936HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3936HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3936HG Gene

Disorders for MIR3936HG Gene

Additional Disease Information for MIR3936HG

No disorders were found for MIR3936HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3936HG Gene

Publications for MIR3936HG Gene

  1. Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103. (PMID: 27584792) He B … Zeng Z (Cell death & disease 2016) 2 3 54
  2. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin SY … Soranzo N (Nature genetics 2014) 3 54
  3. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt SI … Ingelsson E (Nature genetics 2013) 3 54
  4. Human metabolic individuality in biomedical and pharmaceutical research. (PMID: 21886157) Suhre K … Gieger C (Nature 2011) 3 54
  5. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H … Hirschhorn JN (Nature 2010) 3 54

Products for MIR3936HG Gene

Sources for MIR3936HG Gene