Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR3936 Gene

Subcategory (RNA class) for MIR3936 Gene

miRNA

Quality Score for this RNA gene is

13

Aliases for MIR3936 Gene

  • MicroRNA 3936 2 3 5
  • Hsa-Mir-3936 3
  • Mir-3936 3

External Ids for MIR3936 Gene

Previous GeneCards Identifiers for MIR3936 Gene

  • GC05U901511
  • GC05M131703

Summaries for MIR3936 Gene

Entrez Gene Summary for MIR3936 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3936 Gene

MIR3936 (MicroRNA 3936) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3936 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3936 Gene

Genomics for MIR3936 Gene

GeneHancer (GH) Regulatory Elements for MIR3936 Gene

Promoters and enhancers for MIR3936 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J132362 Enhancer 1.1 Ensembl ENCODE 650.7 +0.9 870 4.6 FOXA2 SIN3A FEZF1 ZNF2 BRCA1 YY1 FOS RXRA TSHZ1 REST MIR3936 RAD50 MIR3936HG AFF4 ENSG00000224431 ENSG00000248648 ZCCHC10 P4HA2 SLC22A4 IL4
GH05J132292 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.4 +70.6 70579 5.2 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 ZNF548 SP3 ZFP41 SLC22A4 P4HA2 RAD50 AFF4 MIR3936HG IL4 FNIP1 ENSG00000202533 MIR3936 SLC22A5
GH05J132406 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 20.5 -47.1 -47137 11.5 HDGF PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A DMAP1 YBX1 IRF4 YY1 RAD50 ENSG00000283782 MIR3936HG MIR3936 P4HA2 RAPGEF6 ENSG00000202533 LOC105379175 IRF1 ENSG00000224431
GH05J133048 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.2 -685.5 -685502 5.5 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 HSPA4 ENSG00000279691 GC05M133049 GC05M133050 ENSG00000202533 LOC105379175 IL4 ENSG00000224431 AFF4 MIR3936
GH05J132377 Enhancer 0.8 ENCODE 13.6 -12.6 -12573 1.7 PKNOX1 CLOCK NFIB NEUROD1 SIN3A NFXL1 BMI1 ZBTB40 FOS RCOR1 MIR3936HG IL4 MIR3936 AFF4 ENSG00000202533 LOC105379175 P4HA2 SLC22A4 RAD50 ENSG00000230612
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3936 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3936 Gene

Genomic Locations for MIR3936 Gene
chr5:132,365,490-132,365,599
(GRCh38/hg38)
Size:
110 bases
Orientation:
Minus strand
chr5:131,701,182-131,701,291
(GRCh37/hg19)
Size:
110 bases
Orientation:
Minus strand

Genomic View for MIR3936 Gene

Genes around MIR3936 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3936 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3936 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3936 Gene

Proteins for MIR3936 Gene

Post-translational modifications for MIR3936 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3936 Gene

Domains & Families for MIR3936 Gene

Gene Families for MIR3936 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3936: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3936 Gene

Function for MIR3936 Gene

Phenotypes From GWAS Catalog for MIR3936 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3936 Gene

Localization for MIR3936 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3936 Gene

Pathways & Interactions for MIR3936 Gene

SuperPathways for MIR3936 Gene

No Data Available

Interacting Proteins for MIR3936 Gene

Gene Ontology (GO) - Biological Process for MIR3936 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3936 Gene

Drugs & Compounds for MIR3936 Gene

No Compound Related Data Available

Transcripts for MIR3936 Gene

mRNA/cDNA for MIR3936 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3936 Gene

No ASD Table

Relevant External Links for MIR3936 Gene

GeneLoc Exon Structure for
MIR3936
ECgene alternative splicing isoforms for
MIR3936

Expression for MIR3936 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3936 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3936 Gene:

MIR3936
genes like me logo Genes that share expression patterns with MIR3936: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3936 Gene

Orthologs for MIR3936 Gene

Evolution for MIR3936 Gene

ENSEMBL:
Gene Tree for MIR3936 (if available)
TreeFam:
Gene Tree for MIR3936 (if available)

No data available for Orthologs for MIR3936 Gene

Paralogs for MIR3936 Gene

No data available for Paralogs for MIR3936 Gene

Variants for MIR3936 Gene

Sequence variations from dbSNP and Humsavar for MIR3936 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000831159 -- 132,365,485(-) G/A downstream_transcript_variant
rs1003119326 -- 132,365,611(-) A/T upstream_transcript_variant
rs1004008956 -- 132,365,382(-) T/C downstream_transcript_variant
rs1004239316 -- 132,366,759(-) A/G upstream_transcript_variant
rs1005197699 -- 132,367,085(-) C/T upstream_transcript_variant

Additional Variant Information for MIR3936 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3936

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3936 Gene

Disorders for MIR3936 Gene

Additional Disease Information for MIR3936

No disorders were found for MIR3936 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3936 Gene

Publications for MIR3936 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  3. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D … den Boer ML (Leukemia 2011) 3 58
  4. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3 58
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3936 Gene

Sources for MIR3936 Gene

Content
Loading form....