microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3934 Gene

Data sources for MIR3934 Gene:

RNA type for MIR3934 Gene

miRNA

Aliases for MIR3934 Gene

External Ids for MIR3934 Gene

Previous GeneCards Identifiers for MIR3934 Gene

  • GC06U902132
  • GC06P033667
  • GC06P033844
  • GC06P047407
  • GC06P049455

Summaries for MIR3934 Gene

Entrez Gene Summary for MIR3934 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3934 Gene

MIR3934 (MicroRNA 3934) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3934 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3934 Gene

Genomics for MIR3934 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3934 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033691 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.9 -1863 9.9 BCLAF1 ZNF654 ZNF600 POLR2A ZIC2 REST TRIM22 FEZF1 MNT CTCF MIR3934 UQCC2 IP6K3 BAK1 LEMD2 HLA-DPA1 ITPR3 RPS18 HSALNG0049561 MK280269-057
GH06J033710 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +13.3 13269 2 ZNF207 MYC SSRP1 ZNF592 ATF2 POLR2A NFIC ZBTB10 YY1 MXD4 UQCC2 HSALNG0049563 piR-57135-036 IP6K3 LINC00336 LEMD2 RPS18 MIR3934 ITPR3 MK280269-057
GH06J033704 Enhancer 0.4 dbSUPER 0.4 +6.5 6472 1.1 ZNF600 REST ZNF280D ZNF335 UQCC2 ITPR3 RPS18 MIR3934 HSALNG0049563 MK280269-057 RF00017-4944
GH06J033706 Enhancer 0.4 dbSUPER 0.4 +8.5 8538 0.5 ZBTB20 ZNF121 PRDM1 UQCC2 MIR3934 HSALNG0049563 ITPR3 MK280269-057 RF00017-4944
GH06J033709 Enhancer 0.3 Ensembl 0.4 +7.4 7373 0.2 ZNF335 MIR3934 UQCC2 HSALNG0049563 ITPR3 MK280269-057 RF00017-4944
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3934 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3934 Gene

Latest Assembly
chr6:33,698,128-33,698,234
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Previous Assembly
chr6:33,665,905-33,666,011
(GRCh37/hg19 by Entrez Gene)
Size:
107 bases
Orientation:
Plus strand

chr6:33,665,905-33,666,011
(GRCh37/hg19 by Ensembl)
Size:
107 bases
Orientation:
Plus strand

Genomic View for MIR3934 Gene

Genes around MIR3934 on UCSC Golden Path with GeneCards custom track
MIR3934 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR3934 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3934 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3934 Gene

Proteins for MIR3934 Gene

Post-translational modifications for MIR3934 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3934 Gene

Domains & Families for MIR3934 Gene

Gene Families for MIR3934 Gene

HGNC:
genes like me logo Genes that share domains with MIR3934: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3934 Gene

Function for MIR3934 Gene

Phenotypes From GWAS Catalog for MIR3934 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3934 Gene

Localization for MIR3934 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR3934 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3934 Gene

Pathways & Interactions for MIR3934 Gene

PathCards logo

SuperPathways for MIR3934 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3934 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3934 Gene

Drugs & Compounds for MIR3934 Gene

No Compound Related Data Available

Transcripts for MIR3934 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3934 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003ACE11_9606 miRNA 22 5

RefSeq: NR_037498,

LncBase: hsa-miR-3934-5p,

miRBase: MIMAT0018349,

TarBase: hsa-miR-3934-5p,

ENA: LM382180.1:1..22:ncRNA, LM611263.1:25..46:ncRNA,

URS000075B5A4_9606 miRNA 22 5

RefSeq: NR_037498,

LncBase: hsa-miR-3934-3p,

miRBase: MIMAT0022975,

MirGeneDB: Hsa-Mir-3934_3p,

ENA: LM611263.1:64..85:ncRNA,

URS000075EA68_9606 pre_miRNA 107 4

RefSeq: NR_037498,

Ensembl: ENST00000579806 (view in UCSC) ,

miRBase: MI0016590,

ENA: LM611263.1:1..107:precursor_RNA,

URS0000EFEE26_9606 precursor_RNA 62 1

MirGeneDB: Hsa-Mir-3934,

URS0000EFCB1B_9606 miRNA 23 1

MirGeneDB: Hsa-Mir-3934_5p,

MIR3934 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3934 Gene

No ASD Table

Relevant External Links for MIR3934 Gene

GeneLoc Exon Structure for
MIR3934

No data available for mRNA/cDNA for MIR3934 Gene

Expression for MIR3934 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3934 Gene

genes like me logo Genes that share expression patterns with MIR3934: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3934 Gene

Orthologs for MIR3934 Gene

Evolution for MIR3934 Gene

ENSEMBL:
Gene Tree for MIR3934 (if available)
TreeFam:
Gene Tree for MIR3934 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR3934

No data available for Orthologs for MIR3934 Gene

Paralogs for MIR3934 Gene

No data available for Paralogs for MIR3934 Gene

Variants for MIR3934 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR3934 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR3934 Gene

Variant ID Type Subtype PubMed ID
dgv85n68 CNV loss 17160897
esv3608630 CNV gain 21293372

Additional Variant Information for MIR3934 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3934
Leiden Open Variation Database (LOVD)
MIR3934

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3934 Gene

Disorders for MIR3934 Gene

Additional Disease Information for MIR3934

No disorders were found for MIR3934 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3934 Gene

Publications for MIR3934 Gene

  1. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. (PMID: 21807764) Joyce CE … Bowcock AM (Human molecular genetics 2011) 3
  2. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3934 Gene

Sources for MIR3934 Gene